PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g02964.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 472aa MW: 53469.9 Da PI: 9.3702

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g02964.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.8	3.1e-17	312	399	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.leHnHel 89 +fY++YA+++GF++rks++kk+ r+ +Cs+eg+++ k ++ +++r++ +++tgCka +kvk+ + +v++++ leHnH+l LOC_Os11g02964.1 312 DFYEKYAYHAGFDIRKSRTKKT-------IREICCSREGHHKFYKGDEFERERNHRTKKTGCKAYMKVKNVMvdgEVSSVVYDVVvLEHNHPL 397 6*************998776.......6899******9999999999************987743333455554349***9 PP FAR1 90 ap 91 +p LOC_Os11g02964.1 398 TP 399 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-12	312	399	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MERPAVAVAR GALAVSARAG CWSASELTSM TAWRSALRRV ILPWGRATRA EALPHRRRRL 60 GCKGLCRRPR RAPPSAVEKL RRLERLGRPN TNYPITSLTP GGTHNSSVIT RATEVYASHL 120 LQSGILNYSD LGDEKGDGSS QPPWWQVAGE KGEFSSVERH RSRQVNRCKI ETHLIAGESR 180 PGADLRCSYQ SLSVENEAKQ LYITICDCSQ DCKDGPTGEE LTEHIIWCKV CKNIFKMTGT 240 LPHWVSNGIK GGNWPHFNAR SFSKVVTNHC FKQNDNRLIG LLFTARHMFS GLDDDMVPKQ 300 NMVFKDYDSV YDFYEKYAYH AGFDIRKSRT KKTIREICCS REGHHKFYKG DEFERERNHR 360 TKKTGCKAYM KVKNVMVDGE VSSVVYDVVV LEHNHPLTPS LAAVKHMRSH KHTDDTIMEF 420 VNTMQENRVA QNSLIGVLAD MHGGQENIPF TSRNLENRFV SCICHLPIEL H*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MERPAVAVAR GALAVSARAG CWSASELTSM TAWRSALRRV ILPWGRATRA EALPHRRRRL  60
GCKGLCRRPR RAPPSAVEKL RRLERLGRPN TNYPITSLTP GGTHNSSVIT RATEVYASHL  120
LQSGILNYSD LGDEKGDGSS QPPWWQVAGE KGEFSSVERH RSRQVNRCKI ETHLIAGESR  180
PGADLRCSYQ SLSVENEAKQ LYITICDCSQ DCKDGPTGEE LTEHIIWCKV CKNIFKMTGT  240
LPHWVSNGIK GGNWPHFNAR SFSKVVTNHC FKQNDNRLIG LLFTARHMFS GLDDDMVPKQ  300
NMVFKDYDSV YDFYEKYAYH AGFDIRKSRT KKTIREICCS REGHHKFYKG DEFERERNHR  360
TKKTGCKAYM KVKNVMVDGE VSSVVYDVVV LEHNHPLTPS LAAVKHMRSH KHTDDTIMEF  420
VNTMQENRVA QNSLIGVLAD MHGGQENIPF TSRNLENRFV SCICHLPIEL H*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.27307	1e-147	callus\| leaf

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	H2KWC1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g02964.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g02964

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136970	0.0	AC136970.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence.
GenBank	AC150775	0.0	AC150775.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0048P17,complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	H2KWC1	0.0	H2KWC1_ORYSJ; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	8e-09	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	LOC_Os11g02964.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]