PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g02540.1 | ||||||||
Common Name | LOC4349612, Os11g0117600, OsJ_32733 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 35577.6 Da PI: 6.5002 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.2 | 2.9e-22 | 131 | 191 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 Dgy+WrKYGqK+++g+ +prsYYrCt + gC +kk v+r+ + + ++ Y +eH+++ LOC_Os11g02540.1 131 DGYQWRKYGQKQIEGALYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 191 9************************9888889**********98776537899*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-24 | 114 | 192 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-21 | 122 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-31 | 129 | 192 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.405 | 131 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-22 | 131 | 191 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TPTTPASHST TALAGDGECC LPPGLTTTTT 60 VSGGGRRRGR KRVNRDNDNV KLLLQADDDQ EAVIADHGDA NAKPLPNFTK TRRRKQQATT 120 STMVTTVPDF DGYQWRKYGQ KQIEGALYPR SYYRCTNSTN QGCLAKKTVQ RNGGGGAAGY 180 TVAYISEHTC KSIEPSLPPV ILDTTVRTTN NHQQPAAAES PAATSSSSSN MVMTSSETGN 240 WSGQHGAYAC RQMIAADEEY CCWDTPATTT TTSGSNGGNS TCAEDIELLS RPIRSPMHIA 300 AEGNWMDDLL LVTDGLIVIS NSSITHFLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 131 | 191 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 115 | TRRRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.82510 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115483860 | 0.0 | ||||
Expression Atlas | Q2RBB7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g02540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g02540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123514 | 0.0 | AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616434.1 | 0.0 | probable WRKY transcription factor 33 | ||||
TrEMBL | Q2RBB7 | 0.0 | Q2RBB7_ORYSJ; Os11g0117600 protein | ||||
STRING | ONIVA11G01190.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 | Representative plant | OGRP13140 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 9e-15 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g02540.1 |
Entrez Gene | 4349612 |
Publications ? help Back to Top | |||
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