PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g02530.1
Common NameLOC9270031, Os11g0117500, OsJ_32732, OSNPB_110117500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 321aa    MW: 35915.9 Da    PI: 6.417
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g02530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.36.6e-18146200356
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                       Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  LOC_Os11g02530.1 146 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 200
                       9**************************99999********987.43332.2344444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-21139214IPR003657WRKY domain
SuperFamilySSF1182905.23E-18140214IPR003657WRKY domain
SMARTSM007741.6E-29144216IPR003657WRKY domain
PROSITE profilePS5081114.584146186IPR003657WRKY domain
PfamPF031061.8E-22146214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKNSSNKRSL VADQWHPSSV CCDHRAALRE IAKGQSLVTQ LRAIVLPALH SDERCDLAAQ  60
MLEGILDCSR KAVSQLQLLL SSPHDDDDHH HVDDKRRVRK IISSSDDDDH CSSKAAEDDN  120
AKPLRQHKRR RFGDSVSLET PVPHYDGHQW RKYGQKHINN SKHPRSYYRC TYRQEEKCKA  180
TKTVQQREDL HHANSYNGDH PIMYTVVYYG QHTCCKGPAA LADDHVVVEA SQISTDSHCQ  240
SPSSSSDLQA AEVHAGNSSQ CSNISVTCSP SVVVEDCNKL LDMMPAADEL TADVLLFDMT  300
AYAPLDLDIN WEMDTNALWV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-131462141068OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.861510.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567657900.0
Expression AtlasQ2RBB8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g02530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g02530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2891750.0AK289175.1 Oryza sativa Japonica Group cDNA, clone: J100021A14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616436.10.0probable WRKY transcription factor 54
TrEMBLQ2RBB80.0Q2RBB8_ORYSJ; Os11g0117500 protein
STRINGOS11T0117500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Representative plantOGRP1147447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-17WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]