PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g02520.1 | ||||||||
Common Name | LOC4349611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 281aa MW: 31661.6 Da PI: 6.2248 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 58.8 | 1e-18 | 122 | 186 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 +Dg++WrKYGqK + ++++rsYYrC+ + gCp++k v++ ++ + k++++ Y g+H+++ LOC_Os11g02520.1 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186 8*************************9887889********99876522226899*******995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-22 | 107 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.665 | 116 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.28E-19 | 117 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-28 | 121 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-22 | 122 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPLLPSD NEQAKLALQL LGDILSCSDK 60 AISMLELGGD TKKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP 120 HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY 180 GQHTCRGDGI ADPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDERFEN LCMVQNMPEY 240 LIDFELERAF EFIVNSPLGS EHWTFDDSIR CEHSPICIWG * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14882 | 0.0 | callus| flower| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115487015 | 0.0 | ||||
Expression Atlas | Q2RBB9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g02520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g02520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY781112 | 0.0 | AY781112.1 Oryza sativa (indica cultivar-group) WRKY DNA-binding protein (WRKY89) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616437.1 | 0.0 | probable WRKY transcription factor 67 | ||||
TrEMBL | A0A0E0IXG0 | 0.0 | A0A0E0IXG0_ORYNI; Uncharacterized protein | ||||
TrEMBL | Q2RBB9 | 0.0 | Q2RBB9_ORYSJ; WRKY DNA binding domain containing protein, expressed | ||||
STRING | ONIVA11G01230.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13325 | 15 | 29 | Representative plant | OGRP12402 | 3 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 9e-19 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g02520.1 |
Entrez Gene | 4349611 |
Publications ? help Back to Top | |||
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