PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g02480.1
Common NameOs11g0116900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 225aa    MW: 25187.7 Da    PI: 8.4435
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g02480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-2244105259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  LOC_Os11g02480.1  44 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 105
                       8***************************99999*******8761679*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-2431106IPR003657WRKY domain
SuperFamilySSF1182909.15E-2335106IPR003657WRKY domain
PROSITE profilePS5081115.99638107IPR003657WRKY domain
SMARTSM007742.2E-3343106IPR003657WRKY domain
PfamPF031064.5E-2544104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSSRART PQQQRVSPRK EERTWTTDTY APYDDGHQWR KYGEKKLSNS  60
NFPRFYYRCT YKNDMKCPAT KQVQQKDTND PPLFSVTYFN HHTCNSSSKI VGSTPDSTVQ  120
SRKAISICFN SHGQTGEQPT FLSSSASLLS PSMQSYSSNQ QPDMNTYSRQ FQWADTSSST  180
SNAPVKMEAD DYAEASASPS TTGALSRTLL PIGQSRCIEY FHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-1644104968OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.339900.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0IV30
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g02480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g02480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0732430.0AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616442.11e-167probable WRKY transcription factor 70 isoform X1
TrEMBLA0A0E0R3F71e-166A0A0E0R3F7_ORYRU; Uncharacterized protein
TrEMBLB8BIR21e-166B8BIR2_ORYSI; Uncharacterized protein
TrEMBLI1R2M51e-166I1R2M5_ORYGL; Uncharacterized protein
TrEMBLQ0IV301e-166Q0IV30_ORYSJ; Os11g0116900 protein (Fragment)
TrEMBLQ2RBC31e-166Q2RBC3_ORYSJ; Os11g0116900 protein
STRINGORUFI11G01040.11e-167(Oryza rufipogon)
STRINGOS11T0116900-011e-167(Oryza sativa)
STRINGORGLA11G0201700.11e-167(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-22WRKY DNA-binding protein 55