PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g02470.1

Common Name

LOC107277470, OsJ_32729

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WRKY

Protein Properties

Length: 336aa MW: 37202.4 Da PI: 5.6568

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g02470.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	73.1	3.7e-23	141	202	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +Dg++WrKYG K+++g++f+rsY+rCt++ gC+++k+++++ ++dp ++++tY++eH+++ LOC_Os11g02470.1 141 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQKdKNDPPMFQVTYSNEHTCT 202 8*************************99999***8761679***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-23	133	202	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-21	134	202	IPR003657	WRKY domain
SMART	SM00774	5.2E-33	140	203	IPR003657	WRKY domain
PROSITE profile	PS50811	17.167	141	204	IPR003657	WRKY domain
Pfam	PF03106	6.5E-25	141	201	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MAVTESACLS YEQEAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HALRALNVAL 60 SVMNQPHASS SAAAAAVPVM SLIKAEAATP ANSSSPAADV AADNHVVGKP RRSSSAAKRR 120 RINGEEYKSS SWSQFTPVPH EDGFQWRKYG EKKIQGTHFT RSYFRCTYRD DRGCQATKQI 180 QQKDKNDPPM FQVTYSNEHT CTTTRLINNI NNPAALHNLT ANPNGHHDSD DDDTIFTKMI 240 KQEEQAAWLP PPPPADLATI SNNFDETPGL HVCQEVPPSS SNSSVISHYA DEFDHHQMLE 300 TTVMEEALGL GADLDDPYFY DPNLLLIYES LMNCY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	1e-13	141	201	9	68	OsWRKY45
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	121	KRRRI

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2RBC4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g02470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g02470

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC123514	0.0	AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBank	AP014967	0.0	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616433.1	0.0	probable WRKY transcription factor 70
TrEMBL	Q2RBC4	0.0	Q2RBC4_ORYSJ; WRKY DNA binding domain containing protein
STRING	ONIVA11G01010.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5045	26	63
Representative plant	OGRP13622	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.2	3e-20	WRKY family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g02470.1
Entrez Gene	107277470

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]