PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os11g01480.1

Common Name

LOC4349554, OsJ_32654

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

G2-like

Protein Properties

Length: 322aa MW: 35054.6 Da PI: 7.4797

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os11g01480.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7.3e-31	61	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ LOC_Os11g01480.1 61 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 114 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-29	57	115	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.92	57	117	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-15	58	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-22	60	116	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-8	62	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGSAGKEEEE EDGGGGAPAA AANNYGSSTT SSTTEEEGSG ESRRRTSSSS SVRPYVRSKN 60 PRLRWTPELH LSFVRAVDRL GGQDRATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDES 120 GQVIGGESWR SDDHLQMQGG GHGGQAYNLG HLSLPALHHR SITAGSGTIF QSRFGNSWSP 180 WRCHGSYWLP AGHHLLVGSK PYYPPAAEAE APFRRSSARY VARANTSNHP DFVQGSSSSP 240 DDNIMNHQRP VLKEMICSEG SNHQEGPLNL DLSLDICPRG EKRKRECSWR KQEEDHDHAT 300 VAIGADQEAE SCATGLSLSL F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	62	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.18448	0.0	callus\| leaf\| panicle\| root

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32992506	0.0
Expression Atlas	Q2RBM7	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os11g01480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os11g01480

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241171	0.0	AK241171.1 Oryza sativa Japonica Group cDNA, clone: J065117O05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015617115.1	0.0	probable transcription factor RL9 isoform X1
TrEMBL	A0A0E0IWY8	0.0	A0A0E0IWY8_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0R344	0.0	A0A0E0R344_ORYRU; Uncharacterized protein
TrEMBL	A2ZH98	0.0	A2ZH98_ORYSI; Uncharacterized protein
TrEMBL	Q2RBM7	0.0	Q2RBM7_ORYSJ; Myb-like DNA-binding domain, SHAQKYF class family protein, expressed
STRING	ORUFI11G00320.1	0.0	(Oryza rufipogon)
STRING	ONIVA11G00030.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-38	G2-like family protein

Link Out ? help Back to Top
Phytozome	LOC_Os11g01480.1
Entrez Gene	4349554

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]