PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os11g01130.2 | ||||||||
Common Name | LOC107275468, Os11g0102100, Os12g0101600, OSNPB_110102100, OSNPB_120101600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WOX | ||||||||
Protein Properties | Length: 235aa MW: 25921.2 Da PI: 8.8891 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.9e-21 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ LOC_Os11g01130.2 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 121.3 | 4e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ LOC_Os11g01130.2 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.463 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-6 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.77E-4 | 5 | 60 | No hit | No description |
Pfam | PF00046 | 1.5E-18 | 6 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-8 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RLCARHQQQP SPPSSTVPPA PTAAAAGAVV QVHPAVMQLH HHHHHHHPYA 120 AAAAAQSHHL QQQQQQQAEW PAAVDYCSTA SASASATAAD MAIPPCCRPL KTLELFPTKS 180 TSGGLKEDCC SSSKPWARSV VESLGGRERS SLAVVDSGGD MDGIERRRRE LGER* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 224 | 229 | ERRRRE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0Y5V3 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia (except carpel primordium), stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17351053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. Seems to act as repressor of YAB5. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os11g01130.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os11g01130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM490243 | 0.0 | AM490243.1 Oryza sativa mRNA for putative narrow sheath protein (ns gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616762.1 | 1e-142 | WUSCHEL-related homeobox 3 | ||||
Refseq | XP_015619606.1 | 1e-142 | WUSCHEL-related homeobox 3 | ||||
Swissprot | A2ZH47 | 1e-143 | WOX3_ORYSI; WUSCHEL-related homeobox 3 | ||||
Swissprot | Q33DK1 | 1e-143 | WOX3_ORYSJ; WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A0P0Y5V3 | 1e-172 | A0A0P0Y5V3_ORYSJ; Os11g0102100 protein | ||||
TrEMBL | A8Y7W4 | 1e-172 | A8Y7W4_ORYSA; Putative narrow sheath protein | ||||
STRING | OS11T0102100-00 | 1e-173 | (Oryza sativa) | ||||
STRING | OS12T0101600-00 | 1e-173 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 | Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-35 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os11g01130.2 |
Entrez Gene | 107275468 |
Publications ? help Back to Top | |||
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