PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g42850.1
Common NameLOC4349514, OsJ_32600, OSJNBa0056G17.18, WRKY2
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 300aa    MW: 32567.2 Da    PI: 7.5
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g42850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30152210259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  LOC_Os10g42850.1 152 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 210
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.374146212IPR003657WRKY domain
SuperFamilySSF1182907.19E-26150212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30150212IPR003657WRKY domain
SMARTSM007741.4E-36151211IPR003657WRKY domain
PfamPF031061.6E-25153210IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MCDSLFWQSS ADQGDLSDVV RASLQLQTAP RHQAASPPYV HLLGGGGGGG EDQLAAVSQH  60
AEQQQQSMVD ASAACDLLHA LLPPPPVVQV QQQGASRTRT TIEEDTTGDG EELFAGAHYV  120
VPPIKRRKSQ TKKVVCIPAG ASGGGGGEVV PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS  180
KGCSARKQVE RSRADPTMLV VTYTSDHNHP WPTHRNALAG STRPSSSNSS NIRLQDSTPV  240
HHQSQTGHDR LTTTHLKQED VIISPSLLQP DHHQLCTIID TKHHLLFHQD YPHSFGLFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-24128213280Disease resistance protein RRS1
5w3x_D3e-24128213280Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.468430.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329935550.0
Expression AtlasQ7XBT0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g42850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g42850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546100.0KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613758.10.0protein WRKY1
RefseqXP_015613759.10.0protein WRKY1
TrEMBLA2ZAL70.0A2ZAL7_ORYSI; Uncharacterized protein
TrEMBLQ7XBT00.0Q7XBT0_ORYSJ; Putative DNA-binding protein
STRINGORGLA10G0149800.10.0(Oryza glaberrima)
STRINGOBART10G19790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-54WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]