PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g42490.2 | ||||||||
Common Name | GL2-3, LOC4349488, Os10g0575600, OsJ_031281, OSJNBa0027L23.2, ROC3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 883aa MW: 94667.2 Da PI: 5.8927 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.3e-20 | 135 | 190 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k LOC_Os10g42490.2 135 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 190 688999***********************************************998 PP | |||||||
2 | START | 129.9 | 3e-41 | 350 | 581 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.................SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv................dsgealrasgvvdmvlallveellddkeq 71 la +aa++l ++ a+ep+Wv+ + e e ++ + e r+ +vv+m++ +lv +ld + + LOC_Os10g42490.2 350 LAATAADQLARMCRAGEPLWVRQRgaevmavE-----------EHARMfswpvdgakqgdggavARAEGTRDNAVVIMNSINLVDAFLDAN-K 430 678999******************66554333...........3333344444445567778888888888999*****************.* PP T-TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--...-TTSEE-EES CS START 72 Wdetla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe..sssvvRaell 148 W e ++ ka t++ i+ g g+l lm+ae q+lsplv+ R++vf Ry+ +g+w+ivd + ++ ++svvR++++ LOC_Os10g42490.2 431 WMELFPsivcKARTIQIINHGaasghlgsGTLLLMQAEVQFLSPLVAaREVVFFRYCVHnADEGSWAIVDFPAEGFEE--GllQASVVRCRRR 521 ***********************************************************9999*******55555555..356********** PP SEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 149 pSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 pSg++i++++ng+s+v+wveh+++ g + ++r v sg+a+ga +w++ lqrqce+ LOC_Os10g42490.2 522 PSGCIIQDMPNGYSRVVWVEHMEMVGEEKplQPVFRDYVASGAAFGATRWLSILQRQCER 581 ***********************98765449***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.0E-19 | 119 | 193 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-22 | 122 | 186 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-19 | 133 | 196 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-18 | 135 | 190 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.99E-19 | 135 | 193 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.182 | 340 | 584 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.79E-28 | 343 | 583 | No hit | No description |
CDD | cd08875 | 1.12E-100 | 344 | 580 | No hit | No description |
SMART | SM00234 | 9.3E-23 | 349 | 581 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-33 | 350 | 581 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.1E-4 | 463 | 547 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.92E-15 | 606 | 778 | No hit | No description |
SuperFamily | SSF55961 | 1.92E-15 | 824 | 863 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
MRRMFGDCQV LSSMAAMAGA ASSADALFAS PLIPNPALAG FMSSSAAMPF HHFSNAAATL 60 IPKEEGLMGG LHVAKDEGMD LEMDMELSGG SGSAHLDGLL SFADVDDDHK PQHSGHDQPP 120 DAAQPSGAAG GNAKKKRYHR HTAHQIQQME ALFKECPHPD DKQRLKLSQE LGLKPRQVKF 180 WFQNRRTQMK AQQDRADNVI LRAENENLKS DNFRLQAAIR NVVCPNCGHA AVLADMSYEE 240 QQLRIENARL KDELDRLACI ATRYGGGGGR QPVLSTSALS CISAPPPVLM PPLDLDMNVY 300 SRHFAEQAPV MGCGDLIPPP VVPQHDGAAA YMGAMMAPVQ EQDKQLVVDL AATAADQLAR 360 MCRAGEPLWV RQRGAEVMAV EEHARMFSWP VDGAKQGDGG AVARAEGTRD NAVVIMNSIN 420 LVDAFLDANK WMELFPSIVC KARTIQIINH GAASGHLGSG TLLLMQAEVQ FLSPLVAARE 480 VVFFRYCVHN ADEGSWAIVD FPAEGFEEGL LQASVVRCRR RPSGCIIQDM PNGYSRVVWV 540 EHMEMVGEEK PLQPVFRDYV ASGAAFGATR WLSILQRQCE RLASELARNI ADLGVIRTPE 600 ARTNMMKLSQ RMITTFCANI SASGTQSWTA LSDSTQDTIR VTTRKNTEPG QPSGVILTAV 660 STSWLPFTHQ QVFELLADEQ QRCQLEILSN GGSLHEVAHI ANGSHPRNCI SLLRINAASN 720 SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGED PSYIPLLPLG FAIFPATSPS 780 PAAAPTISSS TTTTTGNGNG ETSSTPPRNS SSNNNNADEL LPPNGCLLTV GMQVLASAVP 840 SAKLNLSSVT AINSHVCNAI HQITAALKSS AGGAGGEPAS DQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18549 | 0.0 | callus| flower| panicle| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32981962 | 0.0 | ||||
Expression Atlas | Q336P2 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g42490.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g42490 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB101646 | 0.0 | AB101646.1 Oryza sativa Japonica Group Roc3 mRNA for GL2-type homeodomain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613461.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_025876369.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q336P2 | 0.0 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A0E0R2V4 | 0.0 | A0A0E0R2V4_ORYRU; Uncharacterized protein | ||||
STRING | OS10T0575600-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g42490.2 |
Entrez Gene | 4349488 |
Publications ? help Back to Top | |||
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