PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g42430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 752aa MW: 80993.8 Da PI: 6.5183 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 576 | 621 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L LOC_Os10g42430.1 576 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 621 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.7E-51 | 120 | 300 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.39 | 572 | 621 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.89E-14 | 575 | 625 | No hit | No description |
SuperFamily | SSF47459 | 2.75E-18 | 575 | 648 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-18 | 576 | 643 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-10 | 576 | 621 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 578 | 627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MWVLLSPLLT TKNPFHPIPI PTFPLLLFSS SLVGVLFQIK SNLEEEEIEI KSMNLWTDDN 60 ASMMEAFMAS ADLPAFPWGA ASTPPPPPPP PHHHHQQQQQ QVLPPPAAAP AAAAFNQDTL 120 QQRLQSIIEG SRETWTYAIF WQSSIDVSTG ASLLGWGDGY YKGCDDDKRK QRSSTPAAAA 180 EQEHRKRVLR ELNSLIAGAG AAPDEAVEEE VTDTEWFFLV SMTQSFPNGL GLPGQALFAA 240 QPTWIATGLS SAPCDRARQA YTFGLRTMVC LPLATGVLEL GSTDVIFQTG DSIPRIRALF 300 NLSAAAASSW PPHPDAASAD PSVLWLADAP PMDMKDSISA ADISVSKPPP PPPHQIQHFE 360 NGSTSTLTEN PSPSVHAPTP SQPAAPPQRQ QQQQQSSQAQ QGPFRRELNF SDFASNGGAA 420 APPFFKPETG EILNFGNDSS SGRRNPSPAP PAATASLTTA PGSLFSQHTP TLTAAANDAK 480 SNNQKRSMEA TSRASNTNNH PAATANEGML SFSSAPTTRP STGTGAPAKS ESDHSDLEAS 540 VREVESSRVV APPPEAEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP 600 NVSKMDKASL LGDAISYINE LRGKLTALET DKETLQSQME SLKKERDARP PAPSGGGGDG 660 GARCHAVEIE AKILGLEAMI RVQCHKRNHP AARLMTALRE LDLDVYHASV SVVKDLMIQQ 720 VAVKMASRVY SQDQLNAALY TRIAEPGTAA R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 8e-62 | 115 | 303 | 4 | 195 | Transcription factor MYC3 |
4rqw_B | 8e-62 | 115 | 303 | 4 | 195 | Transcription factor MYC3 |
4rs9_A | 8e-62 | 115 | 303 | 4 | 195 | Transcription factor MYC3 |
4yz6_A | 8e-62 | 115 | 303 | 4 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 557 | 565 | KRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100484 | 0.0 | leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764697 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269|PubMed:24647160}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g42430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g42430 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC060755 | 0.0 | AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614012.2 | 0.0 | transcription factor MYC2-like | ||||
Swissprot | Q336P5 | 0.0 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | A0A0E0R2V0 | 0.0 | A0A0E0R2V0_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G20700.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 | Representative plant | OGRP3733 | 12 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-130 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g42430.1 |
Publications ? help Back to Top | |||
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