PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g42160.1
Common NamemudrA-like, OSJNBa0095C07.32
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 485aa    MW: 55730 Da    PI: 5.976
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g42160.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.3e-2268156290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       f+n+Y+ + GF+vrk++++k+k +g++ + ++vC +eg+r+e+k++ + ++ ++aetrt+C+ ++ v ++  +g+++v++l+leHnH l+
  LOC_Os10g42160.1  68 FWNSYGGQKGFEVRKRYTNKRKSDGKVRSCRYVCANEGHRKEDKRD-HLTKCPTAETRTDCQVRMGVVLDLeKGNYKVADLVLEHNHILQ 156
                       9******************************************999.999****************999988***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1768155IPR004330FAR1 DNA binding domain
PfamPF105514.3E-25278372IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVIDRNKNGN GKKYGNENGN GFAVIPIVSV FTVFSRKLPF LIIWDGFSPS LLPQVGMEFS  60
STDEAWMFWN SYGGQKGFEV RKRYTNKRKS DGKVRSCRYV CANEGHRKED KRDHLTKCPT  120
AETRTDCQVR MGVVLDLEKG NYKVADLVLE HNHILQLPET SHLMVSQRKI SELQGFEIET  180
ADDAGIGPKA AHELASIQVG GSLNLRYTLR EHKNYLRGKR QREMAYGQAG SMLMYFQDKI  240
AENPSFQYAL QMDQEEQIAN IFWVDAKMLT DYAYFGDVVS FDTTFGTNKE SRLFGVFVGF  300
NQFRETIVFG AVLMYDETYE SFKWLFETFL KAHNGKQPKT IYTDQDFAMG KAVKEVFSEV  360
WHGLCTFHIM QNAAKHLAEV DNKEESSTSP EQIVEDNEKE PSILADFSAC MFEYEDEETF  420
EQAFNTIRAK ASKQSWLDSI YRVKEKWAEC YMKDVFALGM RSTQLSESLN SELKRHFKSD  480
FDII*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8S7N0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g42160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g42160
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1084210.0AB108421.1 Oryza sativa Japonica Group transposon AnacB14 DNA, complete sequence.
GenBankAC0776930.0AC077693.19 Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876513.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBLQ8S7N00.0Q8S7N0_ORYSJ; Putative transposase
STRINGSb06g020630.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-69FAR1-related sequence 5
Publications ? help Back to Top
  1. Ohtsu K,Hirano HY,Tsutsumi N,Hirai A,Nakazono M
    Anaconda, a new class of transposon belonging to the Mu superfamily, has diversified by acquiring host genes during rice evolution.
    Mol. Genet. Genomics, 2005. 274(6): p. 606-15
    [PMID:16208489]