PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g42130.1
Common NameLOC4349457
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 330aa    MW: 35994.7 Da    PI: 6.0989
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g42130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.5e-5361331128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++
  LOC_Os10g42130.1   6 LPPGFRFHPTDDELVGYYLKRKVDSLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATSTGYWKATGKDRK 97 
                       79****************************.99**************95334445667*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +  ge+ gl+ktLvfykgrap ge+tdWvmheyrl
  LOC_Os10g42130.1  98 IAC-AGEVFGLRKTLVFYKGRAPGGERTDWVMHEYRL 133
                       ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-613155IPR003441NAC domain
PROSITE profilePS5100557.8386156IPR003441NAC domain
PfamPF023654.6E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRKVDS LKIELEVIPV IDLYKFEPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATSTGYWK ATGKDRKIAC AGEVFGLRKT LVFYKGRAPG  120
GERTDWVMHE YRLCQDLAHG VSNFIGAYAL CRVIKRHEAG LHGEPPAAKA KGMISKVSSS  180
SSLVTVEHQL SSRGNASPSF TPTNNGSPLV DEMFVGGGGG DPFQLLPSCV PYHGGDACGF  240
DLPPLCMPQT QDPFFSDAGF TQAAPPLYGD VMGSVSEHEL KWDTLGGYSG GGGGELWNAA  300
AAPLLCRQAS DGDDLTAWFT AADDNMSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-53116012169NO APICAL MERISTEM PROTEIN
1ut4_B5e-53116012169NO APICAL MERISTEM PROTEIN
1ut7_A5e-53116012169NO APICAL MERISTEM PROTEIN
1ut7_B5e-53116012169NO APICAL MERISTEM PROTEIN
3swm_A6e-53116015172NAC domain-containing protein 19
3swm_B6e-53116015172NAC domain-containing protein 19
3swm_C6e-53116015172NAC domain-containing protein 19
3swm_D6e-53116015172NAC domain-containing protein 19
3swp_A6e-53116015172NAC domain-containing protein 19
3swp_B6e-53116015172NAC domain-containing protein 19
3swp_C6e-53116015172NAC domain-containing protein 19
3swp_D6e-53116015172NAC domain-containing protein 19
4dul_A5e-53116012169NAC domain-containing protein 19
4dul_B5e-53116012169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.219320.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166334430.0
Expression AtlasQ7G1M8-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g42130.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g42130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332470.0CT833247.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI241J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612876.10.0NAC domain-containing protein 71
SwissprotO496972e-83NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0E0R2S10.0A0A0E0R2S1_ORYRU; Uncharacterized protein
TrEMBLQ7G1M80.0Q7G1M8_ORYSJ; No apical meristem, putative, expressed
STRINGORUFI10G20470.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-84NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]