PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g41770.1
Common NameLOC4349432, OsJ_32508
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family STAT
Protein Properties Length: 702aa    MW: 77741.6 Da    PI: 5.196
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g41770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.21.9e-582263461121
              STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipkl 92 
                       l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +
  LOC_Os10g41770.1 226 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGM 317
                       79**********7.*********************9********************************************************* PP

              STAT  93 kkypfleavskpirCisrsrntrsssltk 121
                       k+y+flea+skpirCisr+r++r+++++k
  LOC_Os10g41770.1 318 KRYTFLEAYSKPIRCISRNRTSRPLGSAK 346
                       ***********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.58E-79146IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103389.33E-55592696No hitNo description
SuperFamilySSF555501.26E-5596678IPR000980SH2 domain
PROSITE profilePS500019.856603701IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MAAPPGRGGA DGYCDLPDVR LELDPGKVRG GGGGFTVCFW LYLSSSARPS SVILHQVAEG  60
GGDKVPFLAL GEGNKLILFP LLGFHREAPT PDSSYPWTDI TNLTEVNECP LDNWFHVGCE  120
VTENIMRLHI DGDLVAETHL HSLYNEPDYQ DDANQINLLG SEDKLEGYVY NMELSCMLGN  180
IQQQFAKNPP FKLSIDYSCS DGIEEGDDGI WNIVGGKASC RRNFILEVIL VDAFGEAAKD  240
REIVASLVYA DNGALVEKSR DDSEPPLLIS CDGIEYPAVS RPLPIIRGRA LFKLKISQLS  300
SKCDNKLFRI FFSTLGMKRY TFLEAYSKPI RCISRNRTSR PLGSAKRIGS ASMDDIKSIN  360
NCEGFGHSGK ANGRLQTHDP SSVVCFHPSK FSKIEDDVQK TSSQNKHAKK MVLDKGAQDV  420
MVSDSTASDY DSMDAGSSWS LSDGDDVESF SDAEIFRYCL DGTHERSKFL RAAAPSVNED  480
DLIKLANQVS LYSGCTHHRN QILISKQLLQ EGADIWSIIS KNNERALWSS AVPEMKAKFL  540
EIVHPSNRGL SEQDFEVLRG IAGCGDDIGR DEFDKLWSWL YPVAIALSKD KINRLWDFTA  600
HRWIEGLITL QETENALRSS RDRLMKPGTF VLRFPTTRSW PHPDAGSLVV TYVGSDNSIH  660
HRLLSLDVSD AKSGNLEDLL LKEPELSQLG RVDRLPSSMQ S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.464000.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329808520.0
Expression AtlasB9G731-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g41770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g41770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLB8BIB60.0B8BIB6_ORYSI; Uncharacterized protein
TrEMBLB9G7310.0B9G731_ORYSJ; Uncharacterized protein
STRINGORGLA10G0141400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Representative plantOGRP59411618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-153SH2 domain protein B