PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g41330.2 | ||||||||
Common Name | LOC4349395, OsJ_32473 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 26628.1 Da PI: 7.701 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.5e-19 | 89 | 139 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+++ta eAa+a+++a+ +l+g LOC_Os10g41330.2 89 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFQLRG 139 7********.**********8...4445*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.54 | 89 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-32 | 89 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-23 | 89 | 148 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-13 | 89 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.1E-38 | 89 | 153 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.90E-28 | 89 | 148 | No hit | No description |
PRINTS | PR00367 | 8.2E-14 | 90 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.2E-14 | 129 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAGFGLDQHL DLIRAHLLED AHHHVLAPSP SPSPPGTGRV RPAPVSLPPR PPLLWAAASA 60 APRQQEECFE LGGGYAGEGE GEEEDDFRRY RGVRQRPWGK YAAEIRDPAR KGARVWLGTY 120 DTAVEAARAY DRAAFQLRGS KAILNFPNEV AADAAVKWAP PVAPIPAAAM SAGRGKRVRS 180 EEQYYLREVK KERLIMAPPE NSSSSSSSAA AAAGDIWDEL KGICSLPPLS PLSPHPHMAF 240 PQLFVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 90 | 150 | 6 | 66 | ATERF1 |
3gcc_A | 2e-27 | 90 | 150 | 6 | 66 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.55386 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519165 | 0.0 | ||||
Expression Atlas | B9G707 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g41330.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g41330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079890 | 0.0 | AC079890.13 Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence. | |||
GenBank | AC084763 | 0.0 | AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614870.1 | 1e-177 | ethylene-responsive transcription factor 5 | ||||
Swissprot | Q40478 | 6e-40 | ERF5_TOBAC; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | B8BI70 | 1e-176 | B8BI70_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9G707 | 1e-176 | B9G707_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA10G0138000.1 | 1e-175 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 7e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g41330.2 |
Entrez Gene | 4349395 |