PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g41330.1
Common NameOs10g0562900, OSJNBa0027P10.12, OSJNBb0089A17.16
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 274aa    MW: 29768.8 Da    PI: 7.2154
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g41330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-1989139255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp     k +r++lg+++ta eAa+a+++a+ +l+g
  LOC_Os10g41330.1  89 RYRGVRQRP-WGKYAAEIRDP---ArKGARVWLGTYDTAVEAARAYDRAAFQLRG 139
                       7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.5489147IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2389148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-3289148IPR001471AP2/ERF domain
PfamPF008471.9E-1389139IPR001471AP2/ERF domain
SMARTSM003809.1E-3889153IPR001471AP2/ERF domain
CDDcd000182.13E-2889148No hitNo description
PRINTSPR003679.6E-1490101IPR001471AP2/ERF domain
PRINTSPR003679.6E-14129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAGFGLDQHL DLIRAHLLED AHHHVLAPSP SPSPPGTGRV RPAPVSLPPR PPLLWAAASA  60
APRQQEECFE LGGGYAGEGE GEEEDDFRRY RGVRQRPWGK YAAEIRDPAR KGARVWLGTY  120
DTAVEAARAY DRAAFQLRGS KAILNFPNEV AADAAVKWAP PVAPIPAAAM SAGRGKRVRS  180
EEQYYLREVK KERLIMAPPE NSSSSSSSAA AAAGDIWDEL KGICSLPPLS PLSPHPHMAF  240
PQLFVIDLAF GQILNSFVLL LLRTRDFAFD YAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2790150363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-2788150466ATERF1
3gcc_A6e-2788150466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.553860.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO335191650.0
Expression AtlasQ9AQU3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. Not expressed in cell culture. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g41330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g41330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418260.0AY341826.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614870.11e-177ethylene-responsive transcription factor 5
SwissprotQ404782e-40ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLQ9AQU30.0Q9AQU3_ORYSJ; AP2 domain containing protein, expressed
STRINGORGLA10G0138000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-24ERF family protein