PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g41130.1
Common NameLOC4349379, Os10g0560700, OSJNBa0042H09.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 290aa    MW: 29728.8 Da    PI: 4.4779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g41130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1794144155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f ta++Aa+a++ a+++++g
  LOC_Os10g41130.1  94 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTADMAARAHDVAALAIKG 144
                       68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PfamPF008473.5E-1294144IPR001471AP2/ERF domain
SMARTSM003802.6E-3495158IPR001471AP2/ERF domain
PROSITE profilePS5103223.11795152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-3295153IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2195153IPR016177DNA-binding domain
PRINTSPR003673.9E-1096107IPR001471AP2/ERF domain
CDDcd000187.31E-3096154No hitNo description
PRINTSPR003673.9E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009037anatomylemma
PO:0001047developmental stagelemma development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAMAKELQET SSSSSSSAAS TSSCSSAVTD AWSSPARPNA VAGGKRKKEV VGEADEAAGG  60
GAGEEEEEEA EAAAAGKSSA ATKKRKRSSD GKHPVYRGVR MRAWGKWVSE IREPRKKSRI  120
WLGTFPTADM AARAHDVAAL AIKGRAAHLN FPDLAGVLPR AASASPKDVQ AAAALAAAFT  180
TSPSSSPSSS LSADDVAPCV VHADADEQPA AAAKNDDDDG STTAPVAAAA AAAAADEQQL  240
FDLPDLLFDI QDGPFGFPAM WAPLADVDEV NAELRLEEPL LWDLGVTDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1787152672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.818390.0panicle| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XC64
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g41130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g41130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798740.0AC079874.21 Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614793.10.0ethylene-responsive transcription factor ERF038
SwissprotQ8LBQ71e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLQ7XC640.0Q7XC64_ORYSJ; AP2 domain containing protein, expressed
STRINGOGLUM10G18570.10.0(Oryza glumipatula)
STRINGORGLA10G0136200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]