PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g40810.1 | ||||||||
Common Name | LOC4349356, OSJNBa0010C11.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 388aa MW: 39620.8 Da PI: 7.77 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.5e-18 | 278 | 313 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ LOC_Os10g40810.1 278 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 313 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-16 | 272 | 322 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.253 | 272 | 308 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-13 | 276 | 336 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-13 | 276 | 310 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.34E-13 | 277 | 324 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 278 | 313 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 278 | 303 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH 60 QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHIGGMG EPSGATPSAT 120 SSDHQTSMLS FADDFYIPTE DAAELEWLSK FVDDSYSDMP NYQSSAHAAM AAAAASAANN 180 GGGSSAGQDS CLTAAPGRGA RSKRSRATAA AAAAWHSLVP RPPSQSSPSS SCSSSDFPSS 240 NKPSGTARPN GSGGGSRGKK SPGPAGAEVG MEAGVRRCTH CASEKTPQWR TGPLGPKTLC 300 NACGVRFKSG RLMPEYRPAA SPTFVLTQHS NSHRKVMELR RQKELLIIRG SHRDAAAAAA 360 AAAAAAAAGS AAATGRPELM FRDYGVC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.46625 | 0.0 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116011657 | 0.0 | ||||
Expression Atlas | Q94LQ6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g40810.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g40810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069300 | 0.0 | AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence. | |||
GenBank | AK242292 | 0.0 | AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613303.1 | 0.0 | GATA transcription factor 2 | ||||
Swissprot | O49741 | 4e-61 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A0E0IWD6 | 0.0 | A0A0E0IWD6_ORYNI; GATA transcription factor | ||||
TrEMBL | A0A0E0R2D3 | 0.0 | A0A0E0R2D3_ORYRU; GATA transcription factor | ||||
TrEMBL | A2ZA51 | 0.0 | A2ZA51_ORYSI; GATA transcription factor | ||||
TrEMBL | Q94LQ6 | 0.0 | Q94LQ6_ORYSJ; GATA transcription factor | ||||
STRING | ORUFI10G19430.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA10G20780.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 2e-45 | GATA transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g40810.1 |
Entrez Gene | 4349356 |
Publications ? help Back to Top | |||
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