PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g40740.1
Common NameLOC4349351, Os10g0556200, OSNPB_100556200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 466aa    MW: 48839.6 Da    PI: 6.7812
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g40740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-16280325555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hne Er+RRdriN+++ +L++l+P++      K +Ka++L ++++Y+k+Lq
  LOC_Os10g40740.1 280 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 325
                       *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.025275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-19278346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18280333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-18280329No hitNo description
PfamPF000101.0E-13280325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYNE VAELTWEKGN  60
ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA  120
RARPVPAPWL GSVGVVAAAD ALVPCDADAA EGRSKRPREV VGEDGRRACA SQGSAAPGRR  180
GESTLLTLDA CCGTAADDVC GFTTTTNNST SLEDRTEDKG SPETENTSIA GGASDSRCFS  240
RRSQSQRGGM CDEDEHVVIR GEGAMRSSIS TKRSRAAAIH NESERKRRDR INQKMKTLQK  300
LVPNSSKTDK ASMLDEVIDY LKQLQAQVQV MSRMGSMMMP MGMAMPQLQM SVMAQMAQMA  360
QIGLSMMNMG QAGGYAPMHM HTPPFLPVSW DAAASSSSAA AADRPPQPTG AATSDAFSAF  420
LASQAAQQNA QQPNGMEAYN RMMAMYQKLN HQQQQQQDQP SNSRQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283288ERKRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.275870.0callus| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567645400.0
Expression AtlasA0A0P0XX67-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g40740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g40740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879250.0AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612716.10.0transcription factor UNE10 isoform X1
RefseqXP_015612717.10.0transcription factor UNE10 isoform X1
TrEMBLA0A0P0XX670.0A0A0P0XX67_ORYSJ; Os10g0556200 protein
TrEMBLB8BI660.0B8BI66_ORYSI; Uncharacterized protein
STRINGOS10T0556200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Representative plantOGRP80031014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-34bHLH family protein