PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g39750.1
Common NameOs10g0544200, OsJ_32337, OSNPB_100544200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 381aa    MW: 40766.5 Da    PI: 4.8263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g39750.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-10199241754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++P  +      K++  +iL  ++ Y+k+L
  LOC_Os10g39750.1 199 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 241
                       79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-14196251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7199241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14199252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MELMDDDGSS SLLEELMAPL RRGTPTTTPE DLWLQAYPMM MSPMCGDGVM LGDLLVGGGN  60
ARNTLASPPP PSFPLPVPLT TTTPCPPLHE VSFEFDSIDC LGEVCNPYKR SGGAVRATAA  120
AQVMVAAMDP RREAASSAVA VAAVEEEERC KARRGAGGGG DSGELAPMFV FGGGGGAAAS  180
VRPRSCRPPQ PGAPSKNLMA ERRRRKRLND RLSMLRSVVP RISKMDRTSI LGDTIGYVKE  240
LMDRIKNLQV EAATGDSSSS STENLSMLKL NTLKPPPSSS SGEETPLIRN STRFEVERRE  300
NGSTRIEMAC AAIPELLPST LAALEALGVE IEQCVISCFD DFAMQASCLQ DDKKREMTRD  360
TEEIKQTLFR SAGYGDGCLI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200207ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.465630.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329736870.0
Expression AtlasQ336V8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g39750.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g39750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636690.0AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613752.20.0transcription factor TDR-like
SwissprotQ9LSL13e-54BH093_ARATH; Transcription factor bHLH93
TrEMBLQ336V80.0Q336V8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGOS10T0544200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1831799
Representative plantOGRP26361130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-53beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]