PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g39190.1 | ||||||||
Common Name | LOC107278273, Os10g0537100, OSJNBa0040D23.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 313aa MW: 33125.2 Da PI: 10.0319 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.9 | 1.1e-29 | 35 | 152 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+kv tpsdv+k++rlv+pk++ae++ g ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L LOC_Os10g39190.1 35 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaagaggggggggggG--GGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRL 125 99******************************99999999998543..347789*************************************** PP -TT-EEEEEE-.SS.SEE..EEEEE-S CS B3 75 kegDfvvFkld.gr.sefelvvkvfrk 99 +gD+v F + g+ +++l++ ++r+ LOC_Os10g39190.1 126 GAGDTVSFGRGlGDaARGRLFIDFRRR 152 *********666888999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-38 | 28 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-28 | 32 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.69E-25 | 33 | 133 | No hit | No description |
SMART | SM01019 | 1.4E-21 | 35 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-27 | 35 | 152 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.338 | 35 | 153 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEFTPISPPT RVAGGEEDSE RGAAAWAVVE KEHMFEKVVT PSDVGKLNRL VIPKQHAERY 60 FPLDAAAGAG GGGGGGGGGG GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV 120 KEKRLGAGDT VSFGRGLGDA ARGRLFIDFR RRRQDAGSFM FPPTAAPPSH SHHHHQRHHP 180 PLPSVPLCPW RDYTTAYGGG YGYGYGGGST PASSRHVLFL RPQVPAAVVL KSVPVHVAAT 240 SAVQEAATTT RPKRVRLFGV NLDCPAAMDD DDDIAGAASR TAASSLLQLP SPSSSTSSST 300 AGKKMCSLDL GL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-55 | 28 | 152 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-55 | 28 | 152 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8LNN8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g39190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g39190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC074196 | 0.0 | AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613852.1 | 0.0 | putative B3 domain-containing protein Os10g0537100 | ||||
Swissprot | Q8LNN8 | 0.0 | Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100 | ||||
TrEMBL | A0A0E0IVJ0 | 0.0 | A0A0E0IVJ0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2Z9R3 | 0.0 | A2Z9R3_ORYSI; Uncharacterized protein | ||||
STRING | OS10T0537100-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 1e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g39190.1 |
Entrez Gene | 107278273 |
Publications ? help Back to Top | |||
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