PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g39030.1 | ||||||||
Common Name | LOC4349233, Os10g0534900, OSJNBa0053C23.7, OSNPB_100534900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 62859 Da PI: 6.9728 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8.3e-09 | 344 | 381 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV +WF N R + LOC_Os10g39030.1 344 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 381 664459******************************88 PP | |||||||
2 | BELL | 94.3 | 1.1e-30 | 207 | 277 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag +a++Yt+lA+++iSrhFr+L+d ++ q+ LOC_Os10g39030.1 207 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAASYTRLASRTISRHFRSLRDGVVAQL 277 5799****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.9E-45 | 140 | 275 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-42 | 146 | 273 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.001 | 322 | 385 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-9 | 325 | 389 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.41E-12 | 325 | 386 | No hit | No description |
SuperFamily | SSF46689 | 3.85E-17 | 326 | 392 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 328 | 391 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.2E-17 | 342 | 381 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence Send to blast |
MAHDPSLGYA DYFAAEVDGT GATELYGLQQ HQQGVGVAEM FGVRGLMPAA HAHEQSKGVG 60 ALVVGGGGVD DGGATTLPTV HFGGLGELHH HQHRQSQAPL SLSLHRPEAA ATSLLMQQQQ 120 QHLHHQPSPP AGAASTWQLQ QGAWHLRGSR FLLPTQQLLQ EFCSLPVKST TSPSSASKAT 180 KPPQEEAASG GGSSSWTAPT QIQSMDAAEL QRLKGKLYTM LEEVDRRYRR YCEQMRALAA 240 SFEAVAGERA AASYTRLASR TISRHFRSLR DGVVAQLQAV RKQLGEKDTA VPGMTKGETP 300 RLRVLDQCLR QHKAYQAGML ESHPWRPQRG LPERAVSILR AWLFEHFLHP YPSDVDKHIL 360 ARQTGLSRSQ VANWFINARV RLWKPMVEEM YAEEMKDEEG SGQSTQASNP QNPNPSSYTS 420 EVRGGGGGGE DRGEQKPSRA QLLHDAGSLA SVVSIGHGGA GRTMVDHHHH QSLNFGTMDQ 480 LDFDAYEAAG GGQGFGAGGG VSLTLGLQQQ HADPHDGVNV AFAAAAAPPN SSGVAAEYLF 540 MGGGEHQQQL PQTAQFGAVM EGDAASHYRG LSATAAGFHL LHDLAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 331 | 388 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 331 | 388 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17301 | 0.0 | flower| leaf| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978047 | 0.0 | ||||
Expression Atlas | Q8LN25 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g39030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g39030 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068029 | 0.0 | AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614125.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
TrEMBL | Q8LN25 | 0.0 | Q8LN25_ORYSJ; Associated with HOX family protein, expressed | ||||
STRING | OS10T0534900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3814 | 37 | 64 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 8e-83 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g39030.1 |
Entrez Gene | 4349233 |