PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g38834.1 | ||||||||
Common Name | LOC4349213, Os10g0532000, OSNPB_100532000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 37539.7 Da PI: 4.8801 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.8 | 1e-53 | 8 | 137 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi++vd+y++ePwdL++ ++ e++ewyfFs +d+ky+tg+r+nrat +g+Wkatg+dk LOC_Os10g38834.1 8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDVDLYRIEPWDLQEhcRIGYeEQSEWYFFSYKDRKYPTGTRTNRATMTGFWKATGRDK 99 69****************************.9***************953533332566********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +v + +++l+g++ktLvfykgrap+g+ktdW++heyrle LOC_Os10g38834.1 100 AVRE-RSRLIGMRKTLVFYKGRAPNGHKTDWIVHEYRLE 137 ***9.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-58 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.594 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-27 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MVIMESCVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDVDLYRIEP WDLQEHCRIG 60 YEEQSEWYFF SYKDRKYPTG TRTNRATMTG FWKATGRDKA VRERSRLIGM RKTLVFYKGR 120 APNGHKTDWI VHEYRLESDE NAPPQEEGWV VCRAFKKRTM QPPRSSIGAW EASYSYHDPA 180 VFVGGGEHFK QEAAAELDGV AAAAGANAFL RYSTRLAELP QLESPPLPSQ GSQAASAVVD 240 GEEDNADSSR RPGGGGGAAA AVTTDWRAFD KFVASQLSPE EQHTCRATDD DDMAALLLLD 300 GGGQEDDAGR WLGSAGLLSA VAADATTDCG LGTSCVPGDI N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-50 | 5 | 159 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.61149 | 0.0 | callus| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32991522 | 0.0 | ||||
Expression Atlas | Q109C3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in root protoxylem and metaxylem poles and in vessels of protoxylems, outermost metaxylems, inner metaxylems, shoots and hypocotyls (PubMed:18445131). Expressed in roots, hypocotyls, cotyledons and leaves. Present in developing xylems (PubMed:16103214, PubMed:16581911). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:16581911, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g38834.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g38834 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106313 | 0.0 | AK106313.1 Oryza sativa Japonica Group cDNA clone:002-101-D07, full insert sequence. | |||
GenBank | JN634073 | 0.0 | JN634073.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613865.1 | 0.0 | NAC domain-containing protein 105 | ||||
Swissprot | O65508 | 1e-118 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | Q109C3 | 0.0 | Q109C3_ORYSJ; No apical meristem, putative, expressed | ||||
STRING | OS10T0532000-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3625 | 37 | 68 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-107 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g38834.1 |
Entrez Gene | 4349213 |
Publications ? help Back to Top | |||
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