PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g38820.1 | ||||||||
Common Name | LOC4349212, Os10g0531900, OSJNBa0053C23.13, OSNPB_100531900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 401aa MW: 43174.2 Da PI: 7.286 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.7 | 1.4e-09 | 248 | 305 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr +r NR +A rs +R+ +i+eLe+kv+ L++e ++L +l l+ ++ + ++ LOC_Os10g38820.1 248 KRVKRVLANRQSAARSKERRMRYIAELEQKVQILQTEATTLSAQLTLLQRDSSGMATQ 305 999******************************************9999887766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.0E-16 | 244 | 308 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 246 | 309 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.5E-9 | 248 | 306 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.7E-9 | 248 | 303 | No hit | No description |
SuperFamily | SSF57959 | 1.34E-10 | 248 | 298 | No hit | No description |
CDD | cd14703 | 2.27E-21 | 249 | 298 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MNTTSANELM MHRHVQAAPY AAAPQQQGGK QRAPGLPPTP PPPPAAASSH SSHGDVCMDD 60 TARGGLLPPR KAHRRSRSDV PFGYFQPLPP PSPKMEAGGG WALPGCGGAG DVDLLNAYMS 120 LEGMGGADGL NNSDGDSRGS SMRTNGADSS ENESEDYVGA DSQALLWGGA GGGEAAGKKR 180 RNNAAGEKAA RHARSLSMDS LMGKLSFAAN GEPAKFSLEF GSGEFTPAEM KRIMADEKLA 240 EMALADPKRV KRVLANRQSA ARSKERRMRY IAELEQKVQI LQTEATTLSA QLTLLQRDSS 300 GMATQNNELK FRLQSMEQQA QLRDALNEAL TAEVQRLKLA ANEVCDTSSS SNLAHQIQLR 360 CQNQMLDLHK QQQQQVEQIP FYQLELPEQQ NGTARNHESK * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.46836 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993816 | 0.0 | ||||
Expression Atlas | Q8LN44 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g38820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g38820 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108607 | 0.0 | AK108607.1 Oryza sativa Japonica Group cDNA clone:002-146-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613793.1 | 0.0 | transcription factor RF2a-like isoform X1 | ||||
TrEMBL | Q8LN44 | 0.0 | Q8LN44_ORYSJ; BZIP transcription factor family protein, expressed | ||||
STRING | OS10T0531900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3536 | 35 | 76 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 7e-65 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g38820.1 |
Entrez Gene | 4349212 |