PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g38000.1 | ||||||||
Common Name | LOC107277951, Os10g0523900, OSNPB_100523900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 20435 Da PI: 6.8039 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.3e-18 | 34 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ g+Wv+eIr+ + r++lg++ t+e+Aa+a++aa+++l+g LOC_Os10g38000.1 34 PVYRGVRFR--AGKWVSEIRElR-----KpSRIWLGTYATPEMAAAAYDAAALALRG 83 68*****96..5*********66.....68*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-12 | 34 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-25 | 35 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.861 | 35 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-24 | 35 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-18 | 35 | 92 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.77E-13 | 36 | 93 | No hit | No description |
PRINTS | PR00367 | 1.2E-6 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001059 | developmental stage | J bicellular pollen stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEQRAAAAAQ QRQGRRQSAA ACGIRRARAE TRHPVYRGVR FRAGKWVSEI RELRKPSRIW 60 LGTYATPEMA AAAYDAAALA LRGRGAALNF PDAARSRPAP ASASADDVRA AATAAAAAMA 120 HQEEDDDSRR QLEDGGGGGG VVDEDDVLEM PRLMVSMAEG LMISPPPVML GLQADGGGIM 180 DEGGGVVRLW DHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-12 | 33 | 91 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8H099 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g38000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g38000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC078894 | 0.0 | AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613984.1 | 1e-133 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9SJR0 | 9e-39 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | Q8H099 | 1e-132 | Q8H099_ORYSJ; AP2 domain containing protein | ||||
STRING | OS10T0523900-00 | 1e-133 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g38000.1 |
Entrez Gene | 107277951 |