PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g34884.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 1203aa MW: 139015 Da PI: 7.6792 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84 | 2.4e-26 | 493 | 590 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 f+n+YA+ +GFsv++++++k+ kr+geitk+t++C+ +gk+e+ +kk te++r+t + +t+Ck++++ k+ + w++++l+l+H LOC_Os10g34884.1 493 FFNFYAYLAGFSVVIAHHYKTtskKRQGEITKYTYKCNLQGKNEPANKKksneqvTEQQRETVVLVKTNCKCTMVAKEV-GQFWQISRLDLNH 584 9*******************999999******************99999999*999999***************99998.************* PP FAR1 86 nHelap 91 nH+l+p LOC_Os10g34884.1 585 NHALCP 590 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.40.10 | 2.1E-7 | 2 | 73 | IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
SuperFamily | SSF50685 | 1.36E-8 | 3 | 73 | IPR009009 | RlpA-like protein, double-psi beta-barrel domain |
Pfam | PF03101 | 5.4E-25 | 493 | 590 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.9E-37 | 685 | 779 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.211 | 972 | 1008 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.0E-4 | 983 | 1010 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1203 aa Download sequence Send to blast |
MARCGHRVRI TASGGSGRSV VAKVVDECDS VHGCDGEHNY EPPCDNNIVD ASPAVWDALG 60 LDKSVGMEHI TWSDDGDESK VRSKKIDMES EKKKAKKKRE EEEPKSKIKS EEKIKTSRSK 120 QGMKFTEPVR IGPLEKKELN SISEHKQKVS FETQGNKQNH MKQNAGIRIM PYAEPNENSK 180 SITQGSKEGN NKTIQSGTNI HQLQDGERSL KESERNKIDT KHTEETSSSI TQITGIGTTQ 240 SPQSPALLHD ELTMLKSHTT PVAQLSYTSL MHQVINSPRI NIEPNMGGRG LESFTSMLQT 300 PSAYNNSMIL TTSRVCEQDM LLEDRNNDLL IPSKHYSYQE FDEIYNSARI TPEIPVDKTM 360 EELYKLQNTH LKSQATYQKF IVRDICREFL QAGPLRTEIK RTLKPYNENF HEQDIEEQQT 420 RPEATEISGI QQQQTEAEMN DNLNSATNNG EELSEEDIDN FLQNEEESSL PIDDKHIPKL 480 GMKFKSHTEA RGFFNFYAYL AGFSVVIAHH YKTTSKKRQG EITKYTYKCN LQGKNEPANK 540 KKSNEQVTEQ QRETVVLVKT NCKCTMVAKE VGQFWQISRL DLNHNHALCP RREAKFLRSH 600 KDMTEEEKRL IRTLKECNIP TRSMIVILSF LRGGLAALPY TKKDKKEQDD PGMYYKFKLD 660 EENKVTSMFW TDGRSTQLYE EYGDCISFDT TYRTNRYNMP FAPFVGVTGH GSTCLFGCAF 720 LGDETAETFK WVFETFITAM GGKHPKTIIT DQDNAMRSAI AQVFQNTKHR NCLFHIKKNC 780 REKIGSMFSA KANRNLYEEY DDILNNCLTE EEFEVLWPQM IEKFSLQNIK YLQLMWKNRA 840 QFVPVYFKYD FCPFIQSTAL SEGTNSRFKR GVGPQHSVMS FMKEYENIND TIFDTEYSKD 900 FQSRTKMPKT LWFNYLIEEQ ASELYNLDIF RKFQNELKDT LRLQVSVIQQ GKVYEVFVSP 960 NSIQQEYRQR KHIVIIDLPN ENFGCICGKF SKDGMLCSHI LKVMLELNVR KIPEKYIIDR 1020 WRKKEKKEKV KGSIHTDATD NSVLMFNVLS RKGADIASKA SKRKRTYQFM MEELEKLEMN 1080 VQLMIEQEAE THLSQDESNT VQNDTVQHAE EEIIEEVEIE DPDLANTKGR KPKRYRRIVE 1140 KMIETSKRKS KDEQHTTETR TSEITNIGNK QEEMKTSKTT KRRKKNNTQE ETPKEKLHAK 1200 TS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4x9u_A | 2e-25 | 2 | 73 | 118 | 187 | Kiwellin |
4x9u_B | 2e-25 | 2 | 73 | 118 | 187 | Kiwellin |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q109H5 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g34884.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g34884 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC023240 | 0.0 | AC023240.9 Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881725.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | Q109H5 | 0.0 | Q109H5_ORYSJ; Transposon protein, putative, unclassified, expressed | ||||
STRING | OB09G10870.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15026 | 3 | 5 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-85 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g34884.1 |