PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g33940.1 | ||||||||
Common Name | ARF22, LOC4348918, Os10g0479900, OSJNBa0093B11.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ARF | ||||||||
Protein Properties | Length: 699aa MW: 75609.9 Da PI: 6.9419 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + LOC_Os10g33940.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 216 89****************************996555555..8999*********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++ +el+v+++r+ LOC_Os10g33940.1 217 TRHGELCVGIRRA 229 479999*****97 PP | |||||||
2 | Auxin_resp | 116.7 | 1.9e-38 | 288 | 371 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ as++++Fev Y+Prast++Fvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+ LOC_Os10g33940.1 288 AASLASSGQPFEVAYYPRASTPDFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 371 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-29 | 119 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-36 | 121 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.46E-21 | 127 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.647 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-33 | 288 | 371 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.079 | 603 | 683 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 699 aa Download sequence Send to blast |
MKEVGEVEEV RCLDPQLWHA CAGGMVQMPA PRSRVYYFAQ GHAEHADGGG GAAAAAAELG 60 PRALPPLVLC RVEGVQFLAD RDSDEVYAKI RLAPVAPGEA EFREPDELCP LGAAGDAAEP 120 SPEKPTSFAK TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGVVWKF 180 RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTRHG ELCVGIRRAK RMACGGMECM 240 SGWNAPGYGG GGFSAFLKEE ESKLMKGHGG GGYMKGKGKV RMADVVEAAS LASSGQPFEV 300 AYYPRASTPD FVVKAASVQA AMRIQWCSGM RFKMAFETED SSRISWFMGT ISSVQVADPN 360 RWPNSPWRLL QVTWDEPDLL QNVKCVSPWL VELVSSIPPI HLGPFSSPRK KLRVPPHPDF 420 PFEGHLLNPI FHGNPLGPSN SPLCCYPDTA PAGIQGARHA QFGLPLTDHQ LNKLHLGLLH 480 SGSFNRLDAI TPPSRISKGF VVSSAPAHDN ISCLLSISTP QVAEKSDDRK TTPHIMLFGK 540 AIFTEQQITS SGSTETLSPG VTGNSSPNGN AHKTGNASDG SGSSICIGFS SQGHEASDLG 600 LEAGHCKVFM ESEDVGRTID LSVFGSYEEL YGRLADMFGI EKEEIINHLH FRDAAGVVKH 660 PGEVPFSDFM KAARRLTIIA GDRERIERPL IECLVEQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 6e-78 | 13 | 396 | 51 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.3105 | 0.0 | callus| flower| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297610667 | 0.0 | ||||
Expression Atlas | Q9AV47 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g33940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g33940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK318617 | 0.0 | AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614842.1 | 0.0 | auxin response factor 22 | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | B9G6A3 | 0.0 | B9G6A3_ORYSJ; Auxin response factor | ||||
STRING | OS10T0479900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g33940.1 |
Entrez Gene | 4348918 |
Publications ? help Back to Top | |||
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