PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g32070.1 | ||||||||
Common Name | LOC107276516, OsJ_31787, OSJNBb0011A08.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 529aa MW: 57300.9 Da PI: 7.9149 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.1 | 5.8e-19 | 65 | 98 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgtt+Tp+WR+gp+g++tLCnaC ++yr+ + LOC_Os10g32070.1 65 CRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGK 98 *******************************976 PP | |||||||
2 | GATA | 49.8 | 4.6e-16 | 237 | 270 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++CgttkTp WR gpd ++LCnaCG +yr+ LOC_Os10g32070.1 237 CAHCGTTKTPAWRLGPDSRRKLCNACGNKYRSGQ 270 *******************************976 PP | |||||||
3 | GATA | 47.6 | 2.2e-15 | 455 | 489 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++CgttkTp W +gpd +LCnaCG yrk +l LOC_Os10g32070.1 455 CTHCGTTKTPAWLSGPDSRGKLCNACGKQYRKGRL 489 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.14E-14 | 57 | 120 | No hit | No description |
PROSITE profile | PS50114 | 12.756 | 59 | 95 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.4E-16 | 59 | 113 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.7E-14 | 63 | 97 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.30E-14 | 64 | 113 | No hit | No description |
Pfam | PF00320 | 2.3E-16 | 65 | 98 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-11 | 230 | 271 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-12 | 231 | 286 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 7.4E-9 | 231 | 288 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.558 | 231 | 267 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 4.05E-9 | 236 | 268 | No hit | No description |
Pfam | PF00320 | 2.3E-14 | 237 | 270 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 8.814 | 387 | 406 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 0.15 | 387 | 433 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.8E-4 | 392 | 406 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.09E-11 | 447 | 510 | No hit | No description |
SMART | SM00401 | 7.4E-9 | 449 | 503 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.224 | 449 | 485 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-10 | 453 | 487 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.57E-10 | 454 | 503 | No hit | No description |
Pfam | PF00320 | 1.6E-13 | 455 | 489 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
MVVVDGLHDG GGGDLQALLD DAGVDDVAAR GGGEVEEEVE RPSNEDAFPA VEKMATAAAA 60 KGLQCRHCGT TETPQWRHGP EGHRTLCNAC SMRYRSGKLV PEYRPLRSPT FSPELHSNRH 120 HRVLQLRRRP GPQSAAPSPA AVARYGGEAK EEEEELAWVS NKDAFATVET TMAPSPRVVE 180 TPPEHDHRPA NTPTTSPEPH SDRPRRVVQL PRRLQEPSAS ANLAHAVAAT ARAGRECAHC 240 GTTKTPAWRL GPDSRRKLCN ACGNKYRSGQ LNSTTFSQNS QEQKKKSKSS ACSRERKRSA 300 VAATVVVGGG LRDDAAAIAD EHLDGGDLQA LLDDVALDDV AARGGGDAGE AKEEEEELEW 360 LSNKDAFPTV ETMSPAPPEN RTKAPVPPAG WQCRHCGSTE TPLWRERDGP AEAEHVRKEE 420 TPPNITPATK HRRIVDLLRC STALNTAAKA VERRCTHCGT TKTPAWLSGP DSRGKLCNAC 480 GKQYRKGRLV PEYRPLNCPT FSPELHSNAH AHRRRRESPV AIAIAGEK* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q94LT1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g32070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g32070 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC034258 | 0.0 | AC034258.10 Oryza sativa chromosome 10 BAC OSJNBb0011A08 genomic sequence, complete sequence. | |||
GenBank | AC096781 | 0.0 | AC096781.6 Oryza sativa chromosome 10 BAC OSJNBa0013H08 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613898.1 | 0.0 | GATA-type transcription factor sreA | ||||
TrEMBL | Q94LT1 | 0.0 | Q94LT1_ORYSJ; GATA zinc finger family protein | ||||
STRING | ORGLA10G0109200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15709 | 14 | 14 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-24 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g32070.1 |
Entrez Gene | 107276516 |