PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g30690.1
Common NameLOC9268141, Os10g0443800, OSNPB_100443800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 280aa    MW: 31861.2 Da    PI: 10.339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g30690.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08186233348
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                        WT  E   lv++v ++G g+W++  r +     Rt+ ++k++w+++l
  LOC_Os10g30690.1 186 HWTFKEITELVKGVSKHGVGSWTKLKRDFFstSIRTAVHLKDKWRNLL 233
                       5****************************99989************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.503179233IPR017877Myb-like domain
SuperFamilySSF466894.13E-14181267IPR009057Homeodomain-like
SMARTSM007171.8E-5183235IPR001005SANT/Myb domain
PfamPF002494.5E-6186233IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-9186234IPR009057Homeodomain-like
CDDcd116603.15E-17187234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDGWMSPLLS IRVCVKILFS FFFLSFFLHF CRDRPELLAL RTAAAAAALF LPAAMEEQPA  60
SGWRWGVVGE PEWAAAAADG GGSSSQMDDM LYLACEGEIQ QLLQGPRDET DIYKCLAGES  120
YLLATKETVT IQTPPNPILN LLDFIPKYGS RCGRRCGRKR KPFSLKPLRF GTTTIRRHHL  180
RKNNEHWTFK EITELVKGVS KHGVGSWTKL KRDFFSTSIR TAVHLKDKWR NLLKACGIKF  240
TSKRKVKVQK TMILSLDMEL VEEIKHLASK HPYPRRKNY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.631660.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977276280.0
Expression AtlasA0A0P0XUM9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g30690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g30690
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2423920.0AK242392.1 Oryza sativa Japonica Group cDNA, clone: J080064A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613834.10.0uncharacterized protein LOC9268141
TrEMBLA0A0P0XUM90.0A0A0P0XUM9_ORYSJ; Os10g0443800 protein
STRINGOS10T0443800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52252134
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-15TRF-like 6