PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g27380.1
Common NameLOC4348617, Os10g0413900, OSNPB_100413900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 376aa    MW: 40454.5 Da    PI: 4.8979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g27380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.92.1e-15111613127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..........................kvka..eekew..yfFskr 64 
                       +G+rF P+d el+   L +k++g++  ++e ++++++i++++P +L                               a  ee+e   yfFs+ 
  LOC_Os10g27380.1  11 AGVRFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYGihrldrsislslslcrspssspatemY--AedEEEEGyiYFFSTM 100
                       7************.78*********54555569*************7457899*************999998542..3223333234777777 PP

               NAM  65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfyk..grapkgektdWvmheyr 127
                       + +    k  +ra++ g+Wk     +++ + +g +vg k t+ fy+  g +++   t+W m+e++
  LOC_Os10g27380.1 101 QFRC--RKIVERAAQGGRWKVNNC-ETLEV-GGVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFA 161
                       6665..56899*********7655.34444.89************5336788889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-21759IPR003441NAC domain
PROSITE profilePS5100518.849181IPR003441NAC domain
PfamPF023651.8E-911161IPR003441NAC domain
SuperFamilySSF1019417.59E-2188181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAAPEGQNKF AGVRFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYGIHR  60
LDRSISLSLS LCRSPSSSPA TEMYAEDEEE EGYIYFFSTM QFRCRKIVER AAQGGRWKVN  120
NCETLEVGGV AVGRKFTMNF YEHIGGDNDL IWTNWGMQEF ARIIGPNKEL ADLALYRLYK  180
KKITRGTGEE KPEDIAAASD GDTESSMNKR RRVEASAAAM ALPPPPPSPG LPGTMMFMAA  240
DQANVASTSQ EWHGQFANGA AAAPSPSGCW PWAPPPTPSA VEPFSFWASA SAATPPAAAN  300
YHPSPQPQPL PPQGGEYYSR HGAFSVAPVP ASACSTPSPE AATSCLLATT SPLPAAGTEG  360
SDSQQQEPPC ELMEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208212KRRRV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961510.0
Expression AtlasQ338D1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g27380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g27380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109420.0AK110942.1 Oryza sativa Japonica Group cDNA clone:002-173-H02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876515.10.0uncharacterized protein LOC4348617
TrEMBLQ338D10.0Q338D1_ORYSJ; Expressed protein
STRINGOS10T0413900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1920699
Representative plantOGRP985338