PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g27360.1 | ||||||||
Common Name | LOC4348616, Os10g0413700, OSNPB_100413700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 44968.9 Da PI: 5.8521 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.3 | 3.6e-24 | 22 | 149 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatg 87 p+GfrF P+d+el+ + L k++g + l+ v+++++i++++P +L + ++ ee+ +yfFs+ + k+a ++k ++ra++ g+Wka LOC_Os10g27360.1 22 PRGFRFVPRDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVL 113 89************.88*********53333456**************83344444443459**998777663335778899********886 PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + ++++ +g vg k ++ fy kg++t+W mhe+ LOC_Os10g27360.1 114 GSSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 149 66666666**************....899*********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-30 | 16 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.926 | 21 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-12 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MAAPGDGEEK KAGSGRNKHG FPRGFRFVPR DQELLDILDD KLRGAPLDRA LDAVFHDTRI 60 LDFHPAKLYG MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE 120 VGGVPVGRKL SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL 180 AADVAKSTNQ SGQASAADYY QTYQNAVSQA YAYAPPYVLQ PGWSQGYPYD VAAAPPTAPW 240 PVCWAPPSAP GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPVANN 300 KPPPPPVAAT ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP TTTTPPLQGT 360 QHVFAPGVVV GHEDEEGYLI VDEVNTWRNT QQLVLEDDDD DDDGRAAGAG AGEGGASASG 420 R* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115481999 | 0.0 | ||||
Expression Atlas | Q7XEN9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g27360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g27360 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109904 | 0.0 | AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614522.1 | 0.0 | uncharacterized protein LOC4348616 | ||||
TrEMBL | A0A0E0QZ29 | 0.0 | A0A0E0QZ29_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q7XEN9 | 0.0 | Q7XEN9_ORYSJ; No apical meristem protein, expressed | ||||
STRING | ORUFI10G10340.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS10T0413700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 | Representative plant | OGRP9853 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-11 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g27360.1 |
Entrez Gene | 4348616 |