PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g26590.1 | ||||||||
Common Name | OSJNBa0060A14.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24478.5 Da PI: 7.2963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.3 | 2.5e-10 | 17 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGV + +grW+ I + +r+ +g +gt+eeAa a+++a +++ g LOC_Os10g26590.1 17 KYKGVAR-TADGRWRGFITNkF-----GRRYGVGDHGTPEEAALAHDRAILAILG 65 8****95.559****8877744.....5*********************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.18E-15 | 17 | 78 | No hit | No description |
PROSITE profile | PS51032 | 11.838 | 17 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-9 | 17 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-9 | 17 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-7 | 17 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0018 | 17 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAGDGTGDDD DVHARVKYKG VARTADGRWR GFITNKFGRR YGVGDHGTPE EAALAHDRAI 60 LAILGAHASP AALNFRAAFS DTELRFLRGP HAPSRRAAGV VAAVMRGAAF DAALERFAAR 120 AYDAHTDPEL ALDVAAFRLA TRDAGTPLAQ PDAERAAFVA AARNKVHDAA WLRSYLRRRR 180 LVGATFEDEN RWPPVVPPAV ADVGDGFAGN ELVYLPYGSC HVDEMMI* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q948I8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g26590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g26590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC021893 | 0.0 | AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0GN16 | 1e-159 | A0A0E0GN16_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QYW3 | 1e-159 | A0A0E0QYW3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z739 | 1e-159 | A2Z739_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q948I8 | 1e-159 | Q948I8_ORYSJ; AP2 domain containing protein | ||||
STRING | ORUFI10G09840.1 | 1e-160 | (Oryza rufipogon) | ||||
STRING | ONIVA03G20150.1 | 1e-160 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15058 | 17 | 18 | Representative plant | OGRP19110 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g26590.1 |