PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g26410.1 | ||||||||
Common Name | LOC107278079, Os10g0403800, OsJ_31454, OSJNBa0044A10.22, OSNPB_100403800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 89aa MW: 9920.3 Da PI: 9.3331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.1 | 5e-06 | 13 | 55 | 14 | 54 |
HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54 d+iN+ +++L++llP++s ++ + L++ + YIksL LOC_Os10g26410.1 13 DEINELISKLQSLLPESSrrRGATSRSPATKLLKEMCSYIKSL 55 68**************887844444555566799999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-8 | 13 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.7E-8 | 13 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MSGRRASGRI TDDEINELIS KLQSLLPESS RRRGATSRSP ATKLLKEMCS YIKSLHREVD 60 DLSERLSELM ATMDSNSPQA DIIRSLLR* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8LNC7 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, young panicles, pistil, lemma and palea. Expressed at low levels in leaves. {ECO:0000269|PubMed:23136524}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}. | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g26410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g26410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837942 | 1e-147 | CT837942.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015N03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613962.1 | 7e-56 | transcription factor ILI3-like | ||||
Swissprot | A2X9L8 | 1e-32 | ILI5_ORYSI; Transcription factor ILI5 | ||||
Swissprot | Q6YUX0 | 1e-32 | ILI5_ORYSJ; Transcription factor ILI5 | ||||
TrEMBL | A0A0D3HDF7 | 2e-54 | A0A0D3HDF7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BA88 | 2e-54 | A0A0E0BA88_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0EXJ4 | 2e-54 | A0A0E0EXJ4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QYU4 | 2e-54 | A0A0E0QYU4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Z729 | 2e-54 | A2Z729_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1QUB1 | 2e-54 | I1QUB1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q8LNC7 | 2e-54 | Q8LNC7_ORYSJ; BHLH family protein, putative, expressed | ||||
STRING | OGLUM10G09100.1 | 3e-55 | (Oryza glumipatula) | ||||
STRING | OMERI10G06270.1 | 3e-55 | (Oryza meridionalis) | ||||
STRING | ORUFI10G09690.1 | 3e-55 | (Oryza rufipogon) | ||||
STRING | OS10T0403800-00 | 3e-55 | (Oryza sativa) | ||||
STRING | ORGLA10G0079400.1 | 3e-55 | (Oryza glaberrima) | ||||
STRING | OBART10G09290.1 | 3e-55 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP928 | 38 | 145 | Representative plant | OGRP8216 | 4 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 3e-27 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g26410.1 |
Entrez Gene | 107278079 |