PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os10g26240.1 | ||||||||
Common Name | OSJNBa0044A10.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 173aa MW: 19373.3 Da PI: 10.6411 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.3 | 6.5e-19 | 29 | 157 | 9 | 127 |
NAM 9 PtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk 95 P+ el L+ k+ + l++v+++++i++++P L+ + + +ee+ +yfF + + +++ +++r+++++k g+Wka+ +k+v sk LOC_Os10g26240.1 29 PRTLELFAI-LRCKLVCGQlpGALNNVFEHIRILEFHPALLHeTYIGKEEDgYIYFFNRWQFATKagNKRRPTQVAKGGTWKASSGSKTVRSK 120 666677744.44444444423344567999***********844555555535588887665444226678888899**************99 PP NAM 96 ..kgelvglkktLvfy...kgrapkgektdWvmheyr 127 +g ++g k t++fy + ++++ kt+W mhe++ LOC_Os10g26240.1 121 kvGGIDIGQKLTMMFYerrFEGDRNPIKTNWGMHEFT 157 888899**********43312456678********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.081 | 21 | 172 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-24 | 28 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-9 | 29 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MGSGRGRRRW CPSTARTGTA CLSAATSSPR TLELFAILRC KLVCGQLPGA LNNVFEHIRI 60 LEFHPALLHE TYIGKEEDGY IYFFNRWQFA TKAGNKRRPT QVAKGGTWKA SSGSKTVRSK 120 KVGGIDIGQK LTMMFYERRF EGDRNPIKTN WGMHEFTKII DDSKNQKPGS PC* |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q8LNE1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os10g26240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os10g26240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC083943 | 1e-174 | AC083943.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 1e-174 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613639.1 | 1e-83 | NAC transcription factor NAM-B2 | ||||
Refseq | XP_015651177.1 | 1e-83 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | Q8LNE1 | 1e-126 | Q8LNE1_ORYSJ; No apical meristem protein | ||||
STRING | OGLUM10G09010.1 | 2e-95 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3563 | 23 | 67 | Representative plant | OGRP9853 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-07 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os10g26240.1 |