PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g25170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 34187.3 Da PI: 5.2297 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 118 | 168 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +g+W+AeIrdp+ r r++lg+f tae Aa+a++aa+++l+g+ LOC_Os10g25170.1 118 RFRGVRKRP-WGKWAAEIRDPV----RgVRVWLGTFPTAESAARAYDAAARRLRGA 168 69*******.**********63....56**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.49E-15 | 118 | 152 | No hit | No description |
PROSITE profile | PS51032 | 24.395 | 118 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-21 | 118 | 175 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-31 | 118 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-35 | 118 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-13 | 118 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-11 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MSQTQSNSNQ THLPTPNPSR ARAMCGGAIL ADLIPSPRSG GHTKKNKRRR ISDDEDFEAA 60 FEEFDAGDDD SDSDSESEEV DEYDVVVDDD DSEDGVVVLP PPPPPPPVIP HERHGARRFR 120 GVRKRPWGKW AAEIRDPVRG VRVWLGTFPT AESAARAYDA AARRLRGAKA KPNFPSAPPP 180 SAAAHRRKKR RAHAATRSPS SPPATSEVTA ASASASSDVP APAFASFVGE PGHGGAKSMP 240 TTSHTSQPAP PATVASENVD DPEVFDPYDV HGGLASYFAG GAYESLESLF AHGGDSAAVD 300 QAASDHWPAA LWSFADDGSF CF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 119 | 175 | 6 | 63 | ATERF1 |
3gcc_A | 4e-19 | 119 | 175 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 50 | KRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.56665 | 0.0 | leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116633457 | 0.0 | ||||
Expression Atlas | Q338N5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g25170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g25170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110269 | 0.0 | AK110269.1 Oryza sativa Japonica Group cDNA clone:002-163-C07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613362.2 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | Q338N5 | 0.0 | Q338N5_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | OS10T0390800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15195 | 14 | 15 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 5e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g25170.1 |