PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g23090.2 | ||||||||
Common Name | HOX8, LOC4348492, Os10g0377300, OSJNBa0095C06.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 282aa MW: 30045.8 Da PI: 4.8227 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.2 | 6.6e-19 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k LOC_Os10g23090.2 41 KKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 94 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 126 | 1.7e-40 | 40 | 132 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eqv++LE+sFe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal+ e ++L++++++L++e+++ LOC_Os10g23090.2 40 EKKRRLAAEQVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIAD 132 69**************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 20 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-18 | 32 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.552 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 39 | 100 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-16 | 41 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.14E-17 | 41 | 97 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 3.8E-13 | 96 | 136 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MRSYMDGGGA AAYEEEEEEV EDDDGGGGGG GGGGGGGLGE KKRRLAAEQV RALERSFEAD 60 NKLDPERKAR IARDLRLHPR QVAVWFQNRR ARWKTKQIER DFAALRSRHD ALRLECDALR 120 RDKDALAAEI ADLRDRVDGQ MSVKLEAVAA DEHQPPPPPP PPPLAYNSKV VDGSTDSDSS 180 AVFNEEASPY SGAAIDHHHH QTPASYDTAG FTSFFAPSTT LTSSLSFPSM FHASSHFDGH 240 QELLVGGGGA GAVADADLGG AGFFAGDEHA GGLSWYGAEG W* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.8598 | 0.0 | callus| flower| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116631319 | 0.0 | ||||
Expression Atlas | Q338Z7 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g23090.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g23090 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079935 | 0.0 | AC079935.3 Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence. | |||
GenBank | AK243294 | 0.0 | AK243294.1 Oryza sativa Japonica Group cDNA, clone: J100053F20, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY346329 | 0.0 | AY346329.1 Oryza sativa (indica cultivar-group) homeodomain leucine-zipper protein Hox8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613231.1 | 0.0 | homeobox-leucine zipper protein HOX8 | ||||
Swissprot | Q338Z7 | 0.0 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A0E0IRI3 | 1e-153 | A0A0E0IRI3_ORYNI; Uncharacterized protein | ||||
STRING | OS10T0377300-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-33 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g23090.2 |
Entrez Gene | 4348492 |
Publications ? help Back to Top | |||
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