PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g22950.1
Common NameLOC4348485, Os10g0375600, OSNPB_100375600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CAMTA
Protein Properties Length: 1024aa    MW: 114123 Da    PI: 6.07
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g22950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1179.63.7e-56221392118
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++
  LOC_Os10g22950.1  22 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENEN 114
                       45559**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                       fqrr+yw+Lee++ +ivlvhyle+k
  LOC_Os10g22950.1 115 FQRRTYWMLEEDFMHIVLVHYLETK 139
                       **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9318144IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7721139IPR005559CG-1 DNA-binding domain
PfamPF038598.4E-5024137IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.7E-6443529IPR013783Immunoglobulin-like fold
CDDcd001020.00537443531No hitNo description
SuperFamilySSF812962.96E-18444530IPR014756Immunoglobulin E-set
PfamPF018331.8E-8444522IPR002909IPT domain
SuperFamilySSF484032.8E-15636739IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.6E-16638741IPR020683Ankyrin repeat-containing domain
CDDcd002041.96E-11639737No hitNo description
PROSITE profilePS5029715.433645739IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.736678710IPR002110Ankyrin repeat
SuperFamilySSF525405.84E-8838891IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37840862IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748841870IPR000048IQ motif, EF-hand binding site
PfamPF006120.023842861IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0059863885IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.542865888IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4866885IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MAAAADARRF AVVPQLDIAQ ILKEAQQRWL RPAEICEILK NYKSFRIAPE PPNRPQSGSL  60
FLFDRKVLRY FRKDGHNWRK KKDGKTVKEA HERLKSGSID VLHCYYAHGE ENENFQRRTY  120
WMLEEDFMHI VLVHYLETKG GKSRTRGNND MHQAAVMDSP LSQLPSQTID GESSLSGQFS  180
EYEEAESDVY SGGTGYHSFT QMQQQQNGIG PVTDASMFSS RVSASSIGNY QGQHAMGHTT  240
NFYSSSQHDS PLVLSDPNLE LANNGHESLW NGVMKPDEGT VQMTHLQPPV HPEQGMFTTE  300
GQGVEYLTFD EVYSDGLSLK DIGAAGADVE PFWQLSSATA DISATENSVQ QNDGSLGAAI  360
GFPFLKTQSS NLSDILKDSF KKSDSFTRWM SKELLDVEDS QIQSSSGAYW NTEEADSIIE  420
ASSREPLDQF TVAPMVLQDQ LFSIVDFSPS WTYAGSKTKV LVTGRFLHAN EVTERCKWSC  480
MFGEVEIQAE ISADGTLRCY SPPHKPGRVP FYVTCSNRLA CSEVREFEFR PSDSQYMDAP  540
SPLGATNKVY FQIRLDNLLS LGPDVYQATI TNPSKEMIDL SKKISSLLAN NDEWSKLLKL  600
ADDNEPLSHD QQDQYAENLI KEKLHVWLLH KVGDGGKGPS VLDDEGLGVL HLAAALGYDW  660
AIRPTVTAGV NINFRDFHGW TALHWAAFCG RERTVVALIA LGAAPGALTD PHPNYPAEST  720
PADLASANGH KGISGFLAES SLTSHLQALN LKEANMSEIS GLPGIGDVTE RNASQPAIGD  780
SLGAVRNAAQ AAARIYQVFR VQSFQRKQAV QYEGDKGGIS DEHALSLLSM KPSKSGQLDP  840
LHAAASRIQN KYRGWKGRKE FLLFRQRIVK IQAHVRGHQV RKHYRKIVWS VGIVEKVILR  900
WRRRRAGLRG FRPTEGAIES SSGGTSSNLV KDKPAGDDYD FLQEGRKQTE ERLQKALARV  960
KSMVQYPEAR DQYQRILNVV SKMQESQTVQ EKILDESTEM DEGDFMSEFK ELWDDDTPLP  1020
GYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.250480.0callus| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329866880.0
Expression AtlasQ339A6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g22950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g22950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1051160.0AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614397.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLQ339A60.0Q339A6_ORYSJ; Anther ethylene-upregulated protein ER1, putative, expressed
STRINGOS10T0375600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains