PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g21560.1
Common NameLOC4348439, OsJ_31218
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 394aa    MW: 43648.8 Da    PI: 4.6984
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g21560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.94.2e-152012810128
               NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyf.FskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
                       +deelv ++L+++ e+++l++ +v+  ++i  ++P++ +       + wy  Fs   ++ ++g+++  + k+gyWk  g+ +  +  ++  vg
  LOC_Os10g21560.1  20 SDEELV-RFLAERKEAHSLPE-NVFVGMNISLIDPRNSE-------DIWYMnFSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPT--STVIVG 101
                       69****.99999999999999.89***********9874.......5687626666666666777777999********966554..5899** PP

               NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                       +k +L  y+g+ap+g++t Wvm+ey +
  LOC_Os10g21560.1 102 MKVSLDHYEGEAPSGKRTGWVMDEYLI 128
                       *************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.59311149IPR003441NAC domain
SuperFamilySSF1019411.02E-2318149IPR003441NAC domain
PfamPF023652.3E-720126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MSSKVPGLAL LNTSISKFWS DEELVRFLAE RKEAHSLPEN VFVGMNISLI DPRNSEDIWY  60
MNFSDDPQSP KNGENAIIKS KTGYWKVVGT VRIPTSTVIV GMKVSLDHYE GEAPSGKRTG  120
WVMDEYLIEQ NDEANLPQDY KNLCTIFFQG DDILNAGDKQ ICLNANVPNE RKEFYLQYLA  180
ELEEQNAAWS NQAVSVNEQD VSSSKGLDGQ KTSAADDQSV NHAPSREGYI ELNDFLNSDS  240
SASTSEYSSQ RTMISEEYFD SDAFLREIRN DHNAADEEHT DSKFSVAAAS KSDCVVISPP  300
EQGFVNNLDN HATIAGDSPQ KSVKNDKVDE HSSEEHPQHS PTTSCFPSHV KRSLSSSSSS  360
SQGTSNSKSP QRQRERSTKK IGKLGKYWCC GSL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.61240.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329827050.0
Expression AtlasB9G5C2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g21560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g21560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0726820.0AK072682.1 Oryza sativa Japonica Group cDNA clone:J023135B15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614544.10.0protein ATAF2 isoform X1
TrEMBLB9G5C20.0B9G5C2_ORYSJ; Uncharacterized protein
STRINGOS10T0359500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109162632
Representative plantOGRP1216455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.14e-14NAC domain containing protein 53