PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g18099.1
Common NameLOC107279019, WRKY18
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 277aa    MW: 30653.4 Da    PI: 7.6477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g18099.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.21.1e-2063124259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                        Dg+ WrKYG K++k+s fpr YYrC+++   +C+++k v++++  dp +  +tY   H+++
  LOC_Os10g18099.1  63 TDGHLWRKYGEKKIKNSSFPRLYYRCSYRddrNCMATKVVQQENdADPPLYRVTYIHPHTCN 124
                       7***************************99999*******9865269************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182909.02E-2258125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-2261124IPR003657WRKY domain
SMARTSM007741.6E-3362125IPR003657WRKY domain
PROSITE profilePS5081114.65363126IPR003657WRKY domain
PfamPF031061.3E-2364123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MASRHQLQTM QFTDPASRSP RPVGGGVHGQ PPPTPMSSPF SSRKPRMQEG HPTCVNLTPI  60
PHTDGHLWRK YGEKKIKNSS FPRLYYRCSY RDDRNCMATK VVQQENDADP PLYRVTYIHP  120
HTCNPSPPAP TPAHVFTEPP PAKAEVHHAV LFRFSSTAGG HTANNAVHRQ QWQPAAATMA  180
AGAQAQLSMT MSDDEREQPP AAIRSAPPAR RLSMFRAVVD GLRQMRSSAP PTPSSSMVVD  240
DGWDTFSSFD LDTCEFSVDD ELLCGDHMYF PDSMQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-15641231068OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6IER3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g18099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g18099
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997740.0AC099774.6 Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613415.20.0probable WRKY transcription factor 32
TrEMBLQ6IER30.0Q6IER3_ORYSJ; WRKY transcription factor 18
STRINGORGLA10G0049300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169931212
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.11e-18ABA overly sensitive mutant 3
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]