PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os10g17630.1 | ||||||||
Common Name | Os10g0323000, OsJ_31059, OSJNBa0065C16.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 273aa MW: 30761 Da PI: 10.0441 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.2e-11 | 56 | 127 | 18 | 95 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 lp + +++++g +k ltl +++++ +v+l +k++++++++kGWk+Fv+ +L++g v F++++ s+ l + LOC_Os10g17630.1 56 LPPEIVARCNGH--DGKHLTLVTRNSKPVNVRL--EKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPST--LDLL 127 677777777655..4568***************..*******************************654333..4444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.49E-14 | 52 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-13 | 55 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.8E-9 | 56 | 124 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.263 | 56 | 132 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-6 | 195 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-11 | 195 | 269 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.161 | 236 | 272 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MVPDQDGELR HDVCSLSTSL RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI 60 VARCNGHDGK HLTLVTRNSK PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS 120 PSTLDLLILD KHGTSLAIPP SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRVTKSE 180 SSANTQLLVQ YFSKRYPIDH LEQLMTGRTE DIEVQTLVGP SVNMVLHTST DHRCNLKKGW 240 TDFALSNGIK LNTVCIFHFY KTTHLGVIVD IF* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.23570 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 116633428 | 0.0 | ||||
Expression Atlas | Q7XFU9 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os10g17630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os10g17630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT833232 | 0.0 | CT833232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA237C07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878103.1 | 1e-51 | B3 domain-containing protein Os10g0323000-like | ||||
Swissprot | Q7XFU9 | 0.0 | Y1030_ORYSJ; B3 domain-containing protein Os10g0323000 | ||||
TrEMBL | I1QTD8 | 0.0 | I1QTD8_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0047100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18310 | 3 | 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os10g17630.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|