PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g14040.1 | ||||||||
Common Name | OSJNBa0014J14.15 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 621aa MW: 71057.4 Da PI: 6.1799 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 51.6 | 3.1e-16 | 66 | 140 | 1 | 75 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgk 75 kfY YAk GFsvrk+k k++ +gei++r+fvCs+eg+ e ++ + +++ ++r tr+gC akl++++++ +gk LOC_Os10g14040.1 66 KFYLGYAKGKGFSVRKNKLKRK--DGEIIWRQFVCSCEGHMELKHFErIDRKMEPRDLTRCGCLAKLEIELNEeKGK 140 6****************99988..9*****************999885678889*****************985555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-14 | 66 | 138 | IPR004330 | FAR1 DNA binding domain |
Gene3D | G3DSA:3.40.50.2000 | 2.7E-25 | 522 | 594 | No hit | No description |
SuperFamily | SSF53756 | 9.42E-19 | 522 | 594 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MRITQVIATS VILGLLWWHS DPSTPKGLQD QVRSDIMNSS YLSLEDQEEY KMMGNVVFSS 60 EDEGYKFYLG YAKGKGFSVR KNKLKRKDGE IIWRQFVCSC EGHMELKHFE RIDRKMEPRD 120 LTRCGCLAKL EIELNEEKGK AQAVELRMSG LRPFQIMEVM ENNHDELDEV GFVMKDLYNF 180 FTQYKMKNIK GRDAEDVFKY LTKKQEKDAE FFFKYTTDEE WHLRNVFWAD AESRIDYAAF 240 GGIVIFDSTY CANKIDADPL EKDATHIYTA VMLKKIRAWI RLIVGLEFIS GTNQDGSTLY 300 VVGLKEDNEV WDEVRVTFKG QALPGVKCHF LKMDCEDIPC SHIFVVLKFL GFDIIPRCCV 360 VDRWTMGATA AFRSDKNNDP NVWSEHMVRY RSLRNMGSDA FFEAARKLEQ TKNVMDFLNG 420 VLDKGSASHE NIVAADFGPM PTHFLSSNQP LEKRVLDPDE IRAKEAPSKR QRPFRVEPAS 480 TYPNLGMSPE WYGSLEWVFP EVQYSSMCIK IAISTGGHAC FGDPGFEGWM RSIESEYKDK 540 FRGWVGFTVL VSHRITACCD ILLMSSRFEP CGLNQLYAMQ YGIVPVVHGT GGLRVKNQEG 600 VANFDDILAK SVAFMVARVD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4hln_A | 6e-35 | 522 | 594 | 478 | 550 | Starch synthase I |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | RKNKLKRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.80153 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297602452 | 0.0 | ||||
Expression Atlas | Q8S6V4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g14040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g14040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC092172 | 0.0 | AC092172.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0014J14, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611098.1 | 1e-127 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | Q8S6V4 | 0.0 | Q8S6V4_ORYSJ; Putative transposase |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP26461 | 2 | 2 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-22 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g14040.1 |