PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g11580.1
Common NameLOC4348238, Os10g0191900, OsJ_30954, OSJNBa0040E17.2, OSNPB_100191900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 336aa    MW: 36908.6 Da    PI: 5.1066
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g11580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC74.91.1e-2331129297
             NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                       +++fw      ie+++  ++  lP++r+k+i+ a e   m+sa++P++++k celf+ el lr+w+ a++ +r+ +  +dia+a+t t+ + f
  LOC_Os10g11580.1  31 MEKFWRMSqeqIEESAGNEELILPISRVKNIIHAKEGGMMLSADTPAFVTKLCELFVQELILRAWVCANSHNREIILGTDIAEAITTTESYHF 123
                       78899876122555555566779********************************************************************** PP

             NF-YC  92 lvdivp 97 
                       l ++v 
  LOC_Os10g11580.1 124 LANVVH 129
                       *99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008085.0E-953115IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.67E-1653129IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.5E-1953128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPIPEKDGVE DNQEDDTFSR LQLLAQQRHA MEKFWRMSQE QIEESAGNEE LILPISRVKN  60
IIHAKEGGMM LSADTPAFVT KLCELFVQEL ILRAWVCANS HNREIILGTD IAEAITTTES  120
YHFLANVVHG HQALGSNIPE IGVSAWKRHK LDEMTSLCHP PQAVQVTDLA NHPPNIPVCP  180
PIGQSGTQHT TSTHVLMMQG ESIHKASKEK SPLKEVMVPT NKVGMTNSSY GVPNGGGATS  240
SKVVIDSPKG ETAQVFSSQH ACPSLEDNYV IPIPAGHGDS FRTLDEANIP QLHQEQKNFI  300
SQDAIVGENI PLNESLEKSK HKDEDLLFPD KDLPE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1029910.0flower| panicle| seed
Os.962370.0flower| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567655760.0
Expression AtlasQ8LMX6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g11580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g11580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0972780.0AC097278.6 Oryza sativa chromosome 10 BAC OSJNBa0040E17 genomic sequence, complete sequence.
GenBankAK2889610.0AK288961.1 Oryza sativa Japonica Group cDNA, clone: J090084F09, full insert sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613386.10.0uncharacterized protein LOC4348238
TrEMBLA0A0E0QX580.0A0A0E0QX58_ORYRU; Uncharacterized protein
TrEMBLQ8LMX60.0Q8LMX6_ORYSJ; Histone-like transcription factor and archaeal histone family protein, expressed
STRINGORUFI10G04960.10.0(Oryza rufipogon)
STRINGOS10T0191900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139681528
Representative plantOGRP1697323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-18nuclear factor Y, subunit C2