PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g09820.1
Common NameOSJNBa0051J07.17
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 497aa    MW: 55433.9 Da    PI: 4.3715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g09820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.35.7e-31331651128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkat 86 
                       lppG++F P+deelv++yL+ k+e+++ ++ ++i+evdi++++P +L +k+k+ +e++wyfF+ r+ +++ +++++nr+     +++g W+at
  LOC_Os10g09820.1  33 LPPGYHFVPSDEELVDFYLRGKIEQRRPPM-DFINEVDIMSFDPVKLIEKYKGyGENRWYFFTVRKPSKTkKKDEPNRKvvvdgVEEGSWSAT 124
                       79*************************999.99**************8555554888*****9988766615779999656666679****** PP

               NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g+   ++ k +++++g+k++L++   +a+++e+ +W mhey +
  LOC_Os10g09820.1 125 GSVAYICGKdHETVIGTKRVLTYK--SARSAEEDKWSMHEYVM 165
                       *******99667779********9..5666669********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-3625192IPR003441NAC domain
PROSITE profilePS5100536.61133192IPR003441NAC domain
PfamPF023651.6E-1834164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MTAESNGGNS SAAATTASNG GRRRHELVPK LRLPPGYHFV PSDEELVDFY LRGKIEQRRP  60
PMDFINEVDI MSFDPVKLIE KYKGYGENRW YFFTVRKPSK TKKKDEPNRK VVVDGVEEGS  120
WSATGSVAYI CGKDHETVIG TKRVLTYKSA RSAEEDKWSM HEYVMLDKSQ ILDTTRDTMS  180
MDQYVLCAIQ LKQTYEAEKK AQEEEERGVK RKRTATRKRR KGDIDQTTSQ EQEDQQQETP  240
PPGDPHDQSV VDAPYYSTQM ALGGEEEVAP VPWCADCMAQ PDRIEYPAVW YNQQEQQPSQ  300
LVDRSMMTQG YIGDLSYIQN QFDQQQAHDH GSINAFDEAL DQCHDTNFAW DNAGIYPGNN  360
LLDGNLDDDT QDQFGNQSTL GALTGELEYG TGYQFHDALQ ATPGSDDASA QSMGIQPAAG  420
HSMGDDDETC CNDDLSSLLA DISRILLDGN GVINNEGNPE GSNQGLHICK DGHQWPLEES  480
TMPTVECVLQ HPGESA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-19201992174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8SAU6
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g09820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g09820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985660.0AC098566.3 Oryza sativa chromosome 10 clone OSJNBa0051J07, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ8SAU60.0Q8SAU6_ORYSJ; No apical meristem protein
STRINGOGLUM10G03910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Representative plantOGRP1208335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-26NAC-like, activated by AP3/PI