PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g07510.1 | ||||||||
Common Name | CRLL2, LOC9266422, Os10g0162600, OSJNBb0042K08.9, OSNPB_100162600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 27974.1 Da PI: 6.9166 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.7 | 1.1e-39 | 33 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf +e +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++ LOC_Os10g07510.1 33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQS 125 7*********************998879***************************************************************** PP DUF260 93 elallkee 100 el++l+ + LOC_Os10g07510.1 126 ELNYLQGH 133 ***99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038127 | 6.5E-139 | 1 | 269 | IPR017394 | LOB domain-containing protein 18/20 |
PROSITE profile | PS50891 | 23.102 | 32 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-40 | 33 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MSSSVVVSAS GSGSGGGGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA 60 AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV 120 AGLQSELNYL QGHLSTMELP SPPPYVAGPT LAPPQPQPLM PMTAAANFNF SDLPSSSAAN 180 IPVTADLSTL FDPLPAAQPQ WGLYQQQQHH HQQLHHHPYD RMGDGSSSSR GGDDDGSDGG 240 DLQALARELL DRHGRSSSSS KLEPPPHTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 29 | 128 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 29 | 128 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XGL4 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g07510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g07510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB200236 | 0.0 | AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613830.1 | 0.0 | LOB domain-containing protein 30 | ||||
Swissprot | O81323 | 2e-62 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A0E0B865 | 0.0 | A0A0E0B865_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0QWJ1 | 0.0 | A0A0E0QWJ1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q7XGL4 | 0.0 | Q7XGL4_ORYSJ; LOB domain protein | ||||
STRING | OGLUM10G03230.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI10G03180.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS10T0162600-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3346 | 37 | 82 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 3e-58 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g07510.1 |
Entrez Gene | 9266422 |
Publications ? help Back to Top | |||
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