PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g07060.1 | ||||||||
Common Name | Os10g0158625, OsJ_30781, OSJNAa0036D19.3, OSJNBa0036D19.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | B3 | ||||||||
Protein Properties | Length: 169aa MW: 18378 Da PI: 10.7727 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.2 | 1.6e-14 | 14 | 94 | 11 | 97 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++ l +p + a+++++++ l+l++++g + ++++ + ++ ++t+GWkeF++a gL++g++++F++++rs++ +v+++ LOC_Os10g07060.1 14 TNQSYLPVPITLATAYEMQHGD--SLRLKTSHGLKIKIRI--KEAASTLYMTTGWKEFAEATGLETGETILFRMSSRSKA--RVMLL 94 5556677888889999988655..6***************..999999*************************9988777..55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.379 | 4 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.24E-14 | 9 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-12 | 14 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-13 | 15 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSSVVFASAR LNATNQSYLP VPITLATAYE MQHGDSLRLK TSHGLKIKIR IKEAASTLYM 60 TTGWKEFAEA TGLETGETIL FRMSSRSKAR VMLLNRQCLI RCPVKTPSTT SSDKNRSLSP 120 SDQLTRASTS AHPSTSKSIP PLRNGTGSTK RSIADTSFCH QLKLTAEN* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7XGM6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g07060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g07060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087723 | 0.0 | AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence. | |||
GenBank | AC116600 | 0.0 | AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q7XGM6 | 1e-122 | Y1086_ORYSJ; Putative B3 domain-containing protein Os10g0158600 | ||||
TrEMBL | A0A0E0IPL5 | 1e-102 | A0A0E0IPL5_ORYNI; Uncharacterized protein | ||||
STRING | OS10T0158625-00 | 1e-121 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP31205 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 6e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g07060.1 |
Publications ? help Back to Top | |||
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