PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g06860.1
Common NameOSJNBa0004E08.21
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 567aa    MW: 63158.4 Da    PI: 6.8667
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g06860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.42.6e-14362448191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgk..wevtkle.leHnHel 89 
                       kfY++YA ++GF+++ks+++k         ++ +C++egk+ ++ ++  +++ +r+++++gCka +k++ ++ dgk   +v++++ l+HnH+l
  LOC_Os10g06860.1 362 KFYQTYACHAGFDIKKSRTHKA-------FHEVCCTREGKHVSKVTD-GDRQWRRPSKKMGCKAYVKLRHNYdDGKitSVVYDVVeLQHNHPL 446
                       6****************98887.......7899**********9999.88899*****************98644411345544349*****9 PP

              FAR1  90 ap 91 
                       +p
  LOC_Os10g06860.1 447 TP 448
                       86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.47E-10246350No hitNo description
PfamPF031012.5E-9362448IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0010018Biological Processfar-red light signaling pathway
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MATSPEIGWS AANLEGIRKS GCDSHRLLNA KKTVIGRATC NSPAPKSIPT LVRTSSSIII  60
TEVADQPHPA SDLSPDLTQR SPIPTDSAPI ISDEVSAQHS APDTAVEPPA IEAGGVIGNV  120
SSASTASQME DALRAVDQEQ HRTELLAETN EDTDDVNSTP WSQPKRFIQK PARFVSPVVV  180
GPSIMPSDVS LSVQLRDFLL NNGGRMSVFI TTLIIYLCVK LMEIDSYVAY GNDVVNSFST  240
GNQTEGLFID AFSSILIKDD RRNRPDTFGK RIFFSTSISI MVPVLHHDHW SLYAINIAHR  300
RVDIMDSNNY NLIGTLESDH HRALSKRIVK RLSDALHEGP SVPPHMVPTE CMAFPTYDDA  360
YKFYQTYACH AGFDIKKSRT HKAFHEVCCT REGKHVSKVT DGDRQWRRPS KKMGCKAYVK  420
LRHNYDDGKI TSVVYDVVEL QHNHPLTPSP SAVKHMRAHK NHDDTVMQFV DTMQESHVPQ  480
SCIMGVLSDL HGGQENIPFT SRDVENSYFF VLSCTKIQMG VVNRTFPPDL CRKAANVRKE  540
NADDINKLLE FFNECTLQNT KFYWDA*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8SB60
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g06860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g06860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0917240.0AC091724.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0004E08, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ8SB600.0Q8SB60_ORYSJ; Uncharacterized protein
STRINGORGLA10G0024000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-10FAR1-related sequence 8