PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os10g02584.3 | ||||||||
Common Name | LOC4347983, LOC9268674, OJ1014H12.2, Os10g0114500, OsJ_30525, OSJNBa0092N12.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 342aa MW: 37750 Da PI: 10.2984 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 410.5 | 2.1e-125 | 1 | 341 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yyepaaslkenlglqlmssia.erdaki...........rernlalsekkaavaerd...................... 57 mddd+s++ r +g ++e+ ++nlglqlmss++ erd+k+ +++++ +++++++++rd LOC_Os10g02584.3 1 MDDDASMSiR-WGgFFESP---ARNLGLQLMSSVPaERDTKQllsgspflhhqHQQHV-PHHHHQPHHPRDcgangnanggamppppateapp 88 9*******66.777***99...88**********99**************99656666.9********************************* PP GAGA_bind 58 ...maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaa 141 m+f+++d++++ +++++++r++k+l++l+v ++++ +++pvg+++++gt++++++qq++epql++++ + +++ee+++++ iee++ LOC_Os10g02584.3 89 smpMNFARSDMWMHPqqQQQHHHPREHKALHNLTVGHGSShiaHHDPVGYGMIPGTHTLQMMQQQTEPQLQPPPPPqQPKEECISSPLIEENV 181 *************9754778999**************9988999****************************9999899************** PP GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSa 233 ++++e + +kkrq++++pk+++akk+kk s++++++ ++++a+ +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GGWqSa LOC_Os10g02584.3 182 PVIDEPPPPKKRQQGRQPKVPRAKKPKK-SAAPREDGAPPNAPaPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSA 273 ****************************.88999*******999************************************************* PP GAGA_bind 234 CCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir LOC_Os10g02584.3 274 CCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 341 *******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.9E-198 | 1 | 341 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.2E-118 | 1 | 341 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDDDASMSIR WGGFFESPAR NLGLQLMSSV PAERDTKQLL SGSPFLHHQH QQHVPHHHHQ 60 PHHPRDCGAN GNANGGAMPP PPATEAPPSM PMNFARSDMW MHPQQQQQHH HPREHKALHN 120 LTVGHGSSHI AHHDPVGYGM IPGTHTLQMM QQQTEPQLQP PPPPQQPKEE CISSPLIEEN 180 VPVIDEPPPP KKRQQGRQPK VPRAKKPKKS AAPREDGAPP NAPAPRRRGP RKNIGMVING 240 IDLDLSRIPT PICSCTGAPQ QCYRWGAGGW QSACCTTTIS TYPLPMSTKR RGARIAGRKM 300 SHGAFKKVLE KLAGEGYNLN NPIDLKTFWA KHGTNKFVTI R* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.20496 | 0.0 | callus| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973661 | 0.0 | ||||
GEO | 45738205 | 0.0 | ||||
Expression Atlas | P0DH88 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os10g02584.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os10g02584 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC078891 | 0.0 | AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence. | |||
GenBank | AC098694 | 0.0 | AC098694.3 Oryza sativa Japonica Group chromosome 10 clone OJ1014H12, complete sequence. | |||
GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. | |||
GenBank | AK063643 | 0.0 | AK063643.1 Oryza sativa Japonica Group cDNA clone:001-118-H02, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY569035 | 0.0 | AY569035.1 Oryza sativa (japonica cultivar-group) barley B recombinant like-protein A mRNA, complete cds. | |||
GenBank | AY569036 | 0.0 | AY569036.1 Oryza sativa (japonica cultivar-group) barley B recombinant like-protein B gene, complete cds. | |||
GenBank | AY569037 | 0.0 | AY569037.1 Oryza sativa (japonica cultivar-group) barley B recombinant like-protein B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612725.1 | 0.0 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612727.1 | 0.0 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612730.1 | 0.0 | barley B recombinant-like protein B isoform X1 | ||||
Refseq | XP_015612731.1 | 0.0 | barley B recombinant-like protein B isoform X1 | ||||
Swissprot | P0DH88 | 0.0 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 0.0 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0QVN8 | 0.0 | A0A0E0QVN8_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI10G00640.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS10T0114500-01 | 0.0 | (Oryza sativa) | ||||
STRING | OS10T0115200-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-60 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os10g02584.3 |
Entrez Gene | 4347983 | 9268674 |
Publications ? help Back to Top | |||
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