PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g01530.1
Common NameOSJNBa0071K19.10
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 275aa    MW: 30277.1 Da    PI: 5.9167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g01530.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11105151455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++ + f +L +++P+      +K +K+++L  ++eY+++L+
  LOC_Os10g01530.1 105 EHVIAERKRREKMHQQFTTLASIVPEI-----TKTDKVSVLGSTIEYVHHLR 151
                       6999**********************7.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14105159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-15105168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-10106155No hitNo description
SMARTSM003531.7E-12107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQQLAESLAN ELFNQPQEQQ EEQHGYHNPS LRVLPFVGDI NKPEGHTPAA AAIRDSFFSL  60
TNGSSSSLNF SALEQQQDSG PMTKFCSPLS EMKRGGRRAT SSMQEHVIAE RKRREKMHQQ  120
FTTLASIVPE ITKTDKVSVL GSTIEYVHHL RERVKILQDI QSMGSTQPPI SDARSRAGSG  180
DDEDDDGNNN EVEIKVEANL QGTTVLLRVV CPEKKGVLIK LLTELEKLGL STMNTNVVPF  240
ADSSLNITIT AQIDNASCTT VELVKNLKST LRNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114ERKRRE
2110115RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.764252e-32flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO886901832e-32
Expression AtlasQ9AYI8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g01530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g01530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693240.0AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBankAC1451270.0AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613484.10.0transcription factor bHLH18
TrEMBLQ9AYI80.0Q9AYI8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGORGLA10G0001900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Representative plantOGRP1298245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.16e-27bHLH family protein