PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g39660.1
Common NameLOC4347911, OJ1003_C09.32, Os09g0570200, OsJ_30417, OSNPB_090570200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 544aa    MW: 59759.8 Da    PI: 5.5079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g39660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000522748223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      kC++C++ F ++ n++rH r+H
  LOC_Os09g39660.1 27 KCTKCPREFCSSINYRRHTRVH 48
                      7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2862648IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MPNVRSSPVA DLPGWPLFSP PKLQLQKCTK CPREFCSSIN YRRHTRVHRR TLQIEKDFLK  60
NRDNIAAFWD KLTLDQAKTI LSLADVDIEG VTGPSILAAL STWMCKPGYA SLPLPYARAG  120
NQLLDLIETT ASRLPVSSNE LFSMLDEASE NTFLSTNPTA CIQKFIFNGE ADKVAPELKN  180
AVACTSYMLE QTLVEAWSAD KAAEALRCQK LLVEEEEAAQ KRQAELIERK RMKKLRQKEQ  240
RLKDLKDEDV TDRFPGSVDG TTDSSGILSL KEATSDPGLY EQEDTQLPTP VASEDNSSFA  300
DLPVEHDIHD PGHEVNPSVT LNQQVFSRHR VGRTENFAQN SFASGGSAIG SKHPASVRHS  360
HYRGANAGAV SNRNKTWTWK VRTEIEEHSP KDELNIDDGQ EIVLNKKSRV LIGSISVAIE  420
DGSECLEDNQ YSKEYPTPAS QLNIGNHPVT KVMQPFNHGE EGNGYNAHND VEVSITPTAQ  480
DHSSSGVMTD GNNCSSCCNA GLAEGGGLRG AIFSSKEAAA FLSQRWKEAI NADHVKLVLC  540
PEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227234ERKRMKKL
2232242KKLRQKEQRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.535860.0callus| flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329872440.0
Expression AtlasQ652N7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g39660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g39660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1020350.0AK102035.1 Oryza sativa Japonica Group cDNA clone:J033081C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611822.10.0uncharacterized protein LOC4347911
RefseqXP_015611823.10.0uncharacterized protein LOC4347911
TrEMBLA0A0E0QVC20.0A0A0E0QVC2_ORYRU; Uncharacterized protein
TrEMBLQ652N70.0Q652N7_ORYSJ; Os09g0570200 protein
STRINGORUFI09G21860.10.0(Oryza rufipogon)
STRINGOS09T0570200-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.18e-85C2H2-like zinc finger protein