PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os09g39490.1 | ||||||||
Common Name | LOC4347894, OJ1003_C09.9, OsJ_30397 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YB | ||||||||
Protein Properties | Length: 168aa MW: 18243.3 Da PI: 4.8697 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 54.4 | 3.1e-17 | 34 | 129 | 6 | 95 |
NF-YB 6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++lP a v r++k+ l + a + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl++ l+++r+ LOC_Os09g39490.1 34 EELPKAIVRRLVKEKLAQVAAggaeviVNKDAMSAFAESARIFIHYLSATANDMCKESKRQTINADDVLKALDEMEFPEFVEPLNTSLQEFRN 126 679**********99976543222333899**************************************************************9 PP NF-YB 93 leg 95 ++ LOC_Os09g39490.1 127 KNA 129 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.1E-32 | 28 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-11 | 35 | 105 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.75E-27 | 36 | 162 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAGETGEGGG SHSQPEKQPG QAAAAASMAE AEVEELPKAI VRRLVKEKLA QVAAGGAEVI 60 VNKDAMSAFA ESARIFIHYL SATANDMCKE SKRQTINADD VLKALDEMEF PEFVEPLNTS 120 LQEFRNKNAA RRSETTQKKA EKRRKIDKES LPQEQNDAAD HGKTDED* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.79324 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297609978 | 0.0 | ||||
Expression Atlas | Q652Q3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os09g39490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os09g39490 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242634 | 0.0 | AK242634.1 Oryza sativa Japonica Group cDNA, clone: J090023D18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611896.1 | 1e-119 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0E0QVA0 | 1e-118 | A0A0E0QVA0_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q652Q3 | 1e-118 | Q652Q3_ORYSJ; Uncharacterized protein | ||||
STRING | ORUFI09G21680.1 | 1e-119 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 | Representative plant | OGRP7862 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 3e-35 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os09g39490.1 |
Entrez Gene | 4347894 |